miRNA display CGI


Results 1 - 20 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 113583 0.75 0.787961
Target:  5'- uGGGGCUGGGCcucgggggcaacgggGGCGGCGCucugcucaugcagcuCAGCCGCg -3'
miRNA:   3'- gCCUUGACUCG---------------UUGUUGCG---------------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 63926 0.78 0.663127
Target:  5'- uGGAGCUGcAGCAG-GACGUCAACCGg -3'
miRNA:   3'- gCCUUGAC-UCGUUgUUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 87903 0.78 0.663127
Target:  5'- uGGAcUUGAGCAACGACuccugGCUGGCCGCc -3'
miRNA:   3'- gCCUuGACUCGUUGUUG-----CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 29229 0.77 0.723279
Target:  5'- uGGAgauccucuACUGGGCcuccagccgcGGCGACGaCCAGCCGCu -3'
miRNA:   3'- gCCU--------UGACUCG----------UUGUUGC-GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 165642 0.77 0.723279
Target:  5'- aCGGugUUGAGCAGCAgcACGCCGcGCgGCa -3'
miRNA:   3'- -GCCuuGACUCGUUGU--UGCGGU-UGgCG- -5'
13965 5' -51.8 NC_003521.1 + 114824 0.76 0.732108
Target:  5'- uGGAGCUGGGCAcgcGCAccgugcucaugcuGCGCCuuagcgugcuGCCGCu -3'
miRNA:   3'- gCCUUGACUCGU---UGU-------------UGCGGu---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 146666 0.76 0.761946
Target:  5'- aGGAGgacGGCAACGAaGCCGACCGCa -3'
miRNA:   3'- gCCUUgacUCGUUGUUgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 202084 0.76 0.77135
Target:  5'- cCGGGACgGGGCc-CGGCGCCucuaauACCGCa -3'
miRNA:   3'- -GCCUUGaCUCGuuGUUGCGGu-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226810 0.75 0.78705
Target:  5'- aGGAcCUGAcGguACAGCGCCAugggguccucgcccGCCGCc -3'
miRNA:   3'- gCCUuGACU-CguUGUUGCGGU--------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 129686 0.78 0.652965
Target:  5'- aGGAGCUGucgacgGGCGAgGACGCCcgcuucugccGGCCGCg -3'
miRNA:   3'- gCCUUGAC------UCGUUgUUGCGG----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 224562 0.78 0.632599
Target:  5'- aGGAACc-AGCGGCAGCGC-AGCCGCa -3'
miRNA:   3'- gCCUUGacUCGUUGUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 132257 0.78 0.622411
Target:  5'- uGGAccacCUGGGCcGCAACGCCAACCu- -3'
miRNA:   3'- gCCUu---GACUCGuUGUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 37212 0.81 0.512356
Target:  5'- cCGGGACUGuucuucAGCGGCGACGCgcuCAACUGCa -3'
miRNA:   3'- -GCCUUGAC------UCGUUGUUGCG---GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 157971 0.8 0.522093
Target:  5'- aCGGcGCUG-GUAGCGACGCC-GCCGCc -3'
miRNA:   3'- -GCCuUGACuCGUUGUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56896 0.8 0.5319
Target:  5'- gCGaGAGCUGGccgucGCGACAGCGCCGcagcACCGCc -3'
miRNA:   3'- -GC-CUUGACU-----CGUUGUUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 83762 0.8 0.5319
Target:  5'- uGGGACaGGGUGGCGGCGCCccccGCCGCg -3'
miRNA:   3'- gCCUUGaCUCGUUGUUGCGGu---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 197402 0.8 0.560692
Target:  5'- cCGGGACUGGGUGucuggccACGACGCCGAaaGCg -3'
miRNA:   3'- -GCCUUGACUCGU-------UGUUGCGGUUggCG- -5'
13965 5' -51.8 NC_003521.1 + 75531 0.8 0.561693
Target:  5'- aGGAGCUGuGUcaguucAGCGGCGCCGGCgGCg -3'
miRNA:   3'- gCCUUGACuCG------UUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 92001 0.79 0.57173
Target:  5'- aCGGAGCggGAGCGGCGAgGCgCGGCgGCg -3'
miRNA:   3'- -GCCUUGa-CUCGUUGUUgCG-GUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 112877 0.79 0.57173
Target:  5'- cCGcGGCUGGcCGACGACGUCAGCCGCg -3'
miRNA:   3'- -GCcUUGACUcGUUGUUGCGGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.