miRNA display CGI


Results 1 - 20 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 91972 0.75 0.780631
Target:  5'- uCGGAAg-GAGCGGC-ACGCaGACCGCa -3'
miRNA:   3'- -GCCUUgaCUCGUUGuUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 31128 1.12 0.007413
Target:  5'- gCGGAACUGAGCAACAACGCCAACCGCu -3'
miRNA:   3'- -GCCUUGACUCGUUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 130629 0.83 0.419831
Target:  5'- uGGcGCUGAGCGcgcACGGCGCCugcGGCCGCa -3'
miRNA:   3'- gCCuUGACUCGU---UGUUGCGG---UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 222223 0.77 0.713395
Target:  5'- uGGAgcugucgugucaGCUGAGCAGCGACGaggaCGaggcGCCGCg -3'
miRNA:   3'- gCCU------------UGACUCGUUGUUGCg---GU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 89819 0.77 0.713395
Target:  5'- uCGGGugUGcGCuACGgcgcuuACGCCGACCGCg -3'
miRNA:   3'- -GCCUugACuCGuUGU------UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 195891 0.8 0.5319
Target:  5'- uCGGAGCUGcAGCAACGcgaccagcuggcGgGCCGGCUGCg -3'
miRNA:   3'- -GCCUUGAC-UCGUUGU------------UgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 117510 0.79 0.581808
Target:  5'- gCGGGAU--GGCGGCGGCGCCGggaGCCGCc -3'
miRNA:   3'- -GCCUUGacUCGUUGUUGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 30495 0.78 0.642786
Target:  5'- gCGGAcCUGcAGC-GCGACGCCAACgGCc -3'
miRNA:   3'- -GCCUuGAC-UCGuUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 239231 0.76 0.77135
Target:  5'- cCGGGACgGGGCc-CGGCGCCucuaauACCGCa -3'
miRNA:   3'- -GCCUUGaCUCGuuGUUGCGGu-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 105858 0.75 0.798789
Target:  5'- ----cCUGAGCGGCuGCGCCGGCgGCg -3'
miRNA:   3'- gccuuGACUCGUUGuUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 17340 0.66 0.998029
Target:  5'- gGGAACgUGGGUcGC--CGCCAGCgGUa -3'
miRNA:   3'- gCCUUG-ACUCGuUGuuGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 226156 0.79 0.568714
Target:  5'- -cGAGCgcGAGCGGCAGCGCCAgacgcgcauggagcACCGCa -3'
miRNA:   3'- gcCUUGa-CUCGUUGUUGCGGU--------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 145872 0.8 0.541773
Target:  5'- cCGGGugcgACUGcAGCAGCGAgGCCAcgGCCGCc -3'
miRNA:   3'- -GCCU----UGAC-UCGUUGUUgCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196417 0.76 0.761946
Target:  5'- aGGAGCcacaUGAGaaCGGCAGCGCCAGCaGCg -3'
miRNA:   3'- gCCUUG----ACUC--GUUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 5815 0.76 0.761946
Target:  5'- aCGGAACaacgaUGgcGGCGGCcGCGCCGGCUGCc -3'
miRNA:   3'- -GCCUUG-----AC--UCGUUGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 38752 0.79 0.581808
Target:  5'- uCGGGGCUcGAGUAAgAACGCCGgcgcccACCGCc -3'
miRNA:   3'- -GCCUUGA-CUCGUUgUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 164750 0.75 0.788871
Target:  5'- gCGGAggcgacggugacgGCUGcggcGGCGGCAGCGgCGACCGUg -3'
miRNA:   3'- -GCCU-------------UGAC----UCGUUGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 116222 0.75 0.816349
Target:  5'- uCGGAcaacgccguACUGAGCcGCAagACGCCccAACCGUa -3'
miRNA:   3'- -GCCU---------UGACUCGuUGU--UGCGG--UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 54578 0.78 0.629542
Target:  5'- uGGuGACgGAGCAcgacgcgcugcucuACGugGCCAGCCGCa -3'
miRNA:   3'- gCC-UUGaCUCGU--------------UGUugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 204211 0.76 0.742804
Target:  5'- cCGGAuUUGAGCGAgGGCGUCAggcaGCCGUg -3'
miRNA:   3'- -GCCUuGACUCGUUgUUGCGGU----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.