miRNA display CGI


Results 1 - 20 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 64511 0.66 0.996709
Target:  5'- aCGGAcGCcucaaggccauguUGcGCGACGACGCCGAcgcCCGUc -3'
miRNA:   3'- -GCCU-UG-------------ACuCGUUGUUGCGGUU---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 30574 0.66 0.996761
Target:  5'- uCGGggUaGGGCAGgucCAAgUGCCGuCCGCg -3'
miRNA:   3'- -GCCuuGaCUCGUU---GUU-GCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 200285 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 70663 0.66 0.995847
Target:  5'- uGGuGCUGcAGCugcugcuggaaaaccGACGGCGUCugcGCCGCa -3'
miRNA:   3'- gCCuUGAC-UCG---------------UUGUUGCGGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 37042 0.66 0.996761
Target:  5'- uGGAuacGgUGuGCGugGACGCCGaaaACCGg -3'
miRNA:   3'- gCCU---UgACuCGUugUUGCGGU---UGGCg -5'
13965 5' -51.8 NC_003521.1 + 25783 0.66 0.996761
Target:  5'- aGGGGCUccacgcGGCuGCAGCccaccaucagcuGCCAGCCGUa -3'
miRNA:   3'- gCCUUGAc-----UCGuUGUUG------------CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 31956 0.66 0.996211
Target:  5'- aGGAACaG-GCAcAUggUGCCGuccaGCCGCa -3'
miRNA:   3'- gCCUUGaCuCGU-UGuuGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 63605 0.66 0.996761
Target:  5'- aGGAcccaGCUGucCGaccuGCAGCGCCGccuggagaaguACCGCa -3'
miRNA:   3'- gCCU----UGACucGU----UGUUGCGGU-----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 163092 0.66 0.995588
Target:  5'- cCGGcccgucCUcGGGCGcCAGCGCCAcgaccACCGCc -3'
miRNA:   3'- -GCCuu----GA-CUCGUuGUUGCGGU-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 116633 0.66 0.996761
Target:  5'- uGGAGuucCUcAGCGGCAgcuACGCCGGCCu- -3'
miRNA:   3'- gCCUU---GAcUCGUUGU---UGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 25541 0.66 0.995588
Target:  5'- aGGGA--GAGCGACGgcggACGCUguugugcaggcGGCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGU----UGCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 151257 0.66 0.995588
Target:  5'- uGGGAC--GGCGACGACGagGAgCGCg -3'
miRNA:   3'- gCCUUGacUCGUUGUUGCggUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 129514 0.66 0.995588
Target:  5'- aGGGAg-GAGCucgAGCGCCGACCa- -3'
miRNA:   3'- gCCUUgaCUCGuugUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 147780 0.66 0.996211
Target:  5'- aCGGugUUGaAGCc-CAGCGCCAcCUGCa -3'
miRNA:   3'- -GCCuuGAC-UCGuuGUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 184101 0.66 0.995521
Target:  5'- uCGGAccGCUgaugaacGAGUAAUAAUGCgCGGCCGa -3'
miRNA:   3'- -GCCU--UGA-------CUCGUUGUUGCG-GUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 17340 0.66 0.998029
Target:  5'- gGGAACgUGGGUcGC--CGCCAGCgGUa -3'
miRNA:   3'- gCCUUG-ACUCGuUGuuGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 127531 0.66 0.996211
Target:  5'- uGGAA--GAGCAuguGCGGCGgCAGCaCGCc -3'
miRNA:   3'- gCCUUgaCUCGU---UGUUGCgGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 68537 0.66 0.996761
Target:  5'- cCGGAcgGC--GGCAGCGGcCGCCAACUaucaGCa -3'
miRNA:   3'- -GCCU--UGacUCGUUGUU-GCGGUUGG----CG- -5'
13965 5' -51.8 NC_003521.1 + 111836 0.66 0.996153
Target:  5'- uGGAGCgugGuGCccAGCAucgucuuuuuccaGCGCCAcGCCGCc -3'
miRNA:   3'- gCCUUGa--CuCG--UUGU-------------UGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 60647 0.66 0.995588
Target:  5'- cCGcGAcCUGAGCAucaaguggggcACGAUGCUcuucgugcugcGGCCGCg -3'
miRNA:   3'- -GC-CUuGACUCGU-----------UGUUGCGG-----------UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.