miRNA display CGI


Results 1 - 20 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 482 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 1476 0.66 0.997242
Target:  5'- aCGGAcuaUGGGgAACGcCGCUAcACCGCc -3'
miRNA:   3'- -GCCUug-ACUCgUUGUuGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 2706 0.72 0.899571
Target:  5'- cCGGAACgccacucGuGCGGgAGCGCCGucACCGCc -3'
miRNA:   3'- -GCCUUGa------CuCGUUgUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 4312 0.67 0.991104
Target:  5'- aGGGACggccggGGGCucGACcguccaugccuGGCGCCAccGCCGCc -3'
miRNA:   3'- gCCUUGa-----CUCG--UUG-----------UUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 4645 0.72 0.899571
Target:  5'- gCGGGugAgUGAGCgAGCGggACGCgGGCCGCg -3'
miRNA:   3'- -GCCU--UgACUCG-UUGU--UGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 4941 0.66 0.996211
Target:  5'- gGGGACcGcGCGACGuCGCCGGCgGg -3'
miRNA:   3'- gCCUUGaCuCGUUGUuGCGGUUGgCg -5'
13965 5' -51.8 NC_003521.1 + 5815 0.76 0.761946
Target:  5'- aCGGAACaacgaUGgcGGCGGCcGCGCCGGCUGCc -3'
miRNA:   3'- -GCCUUG-----AC--UCGUUGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 6153 0.71 0.943207
Target:  5'- aGGAA--GAGCAGCAACcccuggcgggGCCAGgCGCa -3'
miRNA:   3'- gCCUUgaCUCGUUGUUG----------CGGUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 6648 0.66 0.997994
Target:  5'- gCGGuAGCUGcGGCGccccuccGCGACcCCGACCGg -3'
miRNA:   3'- -GCC-UUGAC-UCGU-------UGUUGcGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 12670 0.7 0.959416
Target:  5'- cCGGcuaacaccguACUGAGCAguACGugGaccaCGACCGCg -3'
miRNA:   3'- -GCCu---------UGACUCGU--UGUugCg---GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 17036 0.72 0.928614
Target:  5'- aGGAGCgacgacaacgGcAGCAccaGCAGCGCCGacgauACCGCu -3'
miRNA:   3'- gCCUUGa---------C-UCGU---UGUUGCGGU-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 17340 0.66 0.998029
Target:  5'- gGGAACgUGGGUcGC--CGCCAGCgGUa -3'
miRNA:   3'- gCCUUG-ACUCGuUGuuGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 17469 0.68 0.989879
Target:  5'- uCGGAGgaGAGaCGACGGCaCCGguagcggcGCCGCc -3'
miRNA:   3'- -GCCUUgaCUC-GUUGUUGcGGU--------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 17759 0.72 0.917703
Target:  5'- gGGAACUG-GCcgUAcCGCCGGCgGCg -3'
miRNA:   3'- gCCUUGACuCGuuGUuGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 17761 0.69 0.981669
Target:  5'- gGGAACcgccgUGAcCGGCGGCGCCGcuACCGg -3'
miRNA:   3'- gCCUUG-----ACUcGUUGUUGCGGU--UGGCg -5'
13965 5' -51.8 NC_003521.1 + 18146 0.69 0.977261
Target:  5'- aGGAgcagauGCUGAcaCGACGACGgUGACCGCu -3'
miRNA:   3'- gCCU------UGACUc-GUUGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 18764 0.66 0.998029
Target:  5'- aCGGGucGCUGcuGCGACGGCugguGCCccCCGCc -3'
miRNA:   3'- -GCCU--UGACu-CGUUGUUG----CGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 18825 0.67 0.993202
Target:  5'- ---uGCUGAGCGAC--CGC-AACCGCg -3'
miRNA:   3'- gccuUGACUCGUUGuuGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 19339 0.73 0.879374
Target:  5'- gCGGAACgacAGCGuCAGCGUCugcGCCGCg -3'
miRNA:   3'- -GCCUUGac-UCGUuGUUGCGGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 19582 0.66 0.995588
Target:  5'- cCGGGAUauagUGAaccaaGCGAUGACGuucacccucCCAACCGCa -3'
miRNA:   3'- -GCCUUG----ACU-----CGUUGUUGC---------GGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.