miRNA display CGI


Results 1 - 20 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 241031 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 240738 0.71 0.938578
Target:  5'- gCGuGAGCUGccGGaGGCGGCGCCugcGACCGCu -3'
miRNA:   3'- -GC-CUUGAC--UCgUUGUUGCGG---UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 240035 0.66 0.998029
Target:  5'- gCGGGGCgccGGGCggUccucCGCCGAUgGCg -3'
miRNA:   3'- -GCCUUGa--CUCGuuGuu--GCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 239762 0.7 0.966186
Target:  5'- gCGaGAGCUGGcGCAGgucgguggcccCGACGCCGGCCa- -3'
miRNA:   3'- -GC-CUUGACU-CGUU-----------GUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 239732 0.68 0.987037
Target:  5'- uGGGGCUGAacGCGccGCGG-GCC-ACCGCu -3'
miRNA:   3'- gCCUUGACU--CGU--UGUUgCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239683 0.71 0.951767
Target:  5'- gCGGAcGCUgaccaaGAGCGACGACGUgAacgaacuggGCCGCg -3'
miRNA:   3'- -GCCU-UGA------CUCGUUGUUGCGgU---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239552 0.66 0.997663
Target:  5'- aGGAGCUggaaaacuacGAGCcguucgccuCGGCGCCAcacCCGCc -3'
miRNA:   3'- gCCUUGA----------CUCGuu-------GUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 239231 0.76 0.77135
Target:  5'- cCGGGACgGGGCc-CGGCGCCucuaauACCGCa -3'
miRNA:   3'- -GCCUUGaCUCGuuGUUGCGGu-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239186 0.69 0.974785
Target:  5'- cCGGGAC-GGGCuugucuucgggGAUGGCGCCGagccagACCGCa -3'
miRNA:   3'- -GCCUUGaCUCG-----------UUGUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239181 0.71 0.943207
Target:  5'- aGcGACUGGGCAGCAcgacgcccagaaACaGCCAcCCGCa -3'
miRNA:   3'- gCcUUGACUCGUUGU------------UG-CGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239042 0.66 0.998029
Target:  5'- cCGGAcCUG-GUcGCGGCGCCGuguuCCGa -3'
miRNA:   3'- -GCCUuGACuCGuUGUUGCGGUu---GGCg -5'
13965 5' -51.8 NC_003521.1 + 238615 0.7 0.969254
Target:  5'- uGGGuac--GCGACGGCGCCGGCCaGCu -3'
miRNA:   3'- gCCUugacuCGUUGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 238613 0.69 0.981669
Target:  5'- aGGGcCUGGGCGua-GgGCCGGCCGUc -3'
miRNA:   3'- gCCUuGACUCGUuguUgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 237299 0.66 0.996153
Target:  5'- gCGGcACaGAGCAccGCGauccagcACGCUGAUCGCa -3'
miRNA:   3'- -GCCuUGaCUCGU--UGU-------UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 236616 0.69 0.979553
Target:  5'- aCGGu-CUGGGCGGCGAU-CCAGCagaGCa -3'
miRNA:   3'- -GCCuuGACUCGUUGUUGcGGUUGg--CG- -5'
13965 5' -51.8 NC_003521.1 + 236148 0.67 0.991104
Target:  5'- aCGGGACuUGAGCAagauGCGGCGuuucggaaacccCCGugauCCGCu -3'
miRNA:   3'- -GCCUUG-ACUCGU----UGUUGC------------GGUu---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 235786 0.71 0.951767
Target:  5'- cCGGcauguuucGCggGGGCGGCGugcccCGCCGGCCGCg -3'
miRNA:   3'- -GCCu-------UGa-CUCGUUGUu----GCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 235607 0.67 0.992208
Target:  5'- gCGG-ACUcGGGCGG-AGC-CCGACCGCg -3'
miRNA:   3'- -GCCuUGA-CUCGUUgUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 235439 0.68 0.989749
Target:  5'- uGGGAUuccaccaUGAc--GCGACGCCAAUCGCg -3'
miRNA:   3'- gCCUUG-------ACUcguUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 235388 0.69 0.979553
Target:  5'- aCGGGAUgGAGUc-CGACGCCGAuuccuCCGCc -3'
miRNA:   3'- -GCCUUGaCUCGuuGUUGCGGUU-----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.