miRNA display CGI


Results 1 - 20 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 31128 1.12 0.007413
Target:  5'- gCGGAACUGAGCAACAACGCCAACCGCu -3'
miRNA:   3'- -GCCUUGACUCGUUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 116935 0.83 0.394093
Target:  5'- aCGGccuGCUGGGCAACAGCGUgGACgCGCu -3'
miRNA:   3'- -GCCu--UGACUCGUUGUUGCGgUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 130629 0.83 0.419831
Target:  5'- uGGcGCUGAGCGcgcACGGCGCCugcGGCCGCa -3'
miRNA:   3'- gCCuUGACUCGU---UGUUGCGG---UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 37212 0.81 0.512356
Target:  5'- cCGGGACUGuucuucAGCGGCGACGCgcuCAACUGCa -3'
miRNA:   3'- -GCCUUGAC------UCGUUGUUGCG---GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 157971 0.8 0.522093
Target:  5'- aCGGcGCUG-GUAGCGACGCC-GCCGCc -3'
miRNA:   3'- -GCCuUGACuCGUUGUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56896 0.8 0.5319
Target:  5'- gCGaGAGCUGGccgucGCGACAGCGCCGcagcACCGCc -3'
miRNA:   3'- -GC-CUUGACU-----CGUUGUUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 195891 0.8 0.5319
Target:  5'- uCGGAGCUGcAGCAACGcgaccagcuggcGgGCCGGCUGCg -3'
miRNA:   3'- -GCCUUGAC-UCGUUGU------------UgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 83762 0.8 0.5319
Target:  5'- uGGGACaGGGUGGCGGCGCCccccGCCGCg -3'
miRNA:   3'- gCCUUGaCUCGUUGUUGCGGu---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 145872 0.8 0.541773
Target:  5'- cCGGGugcgACUGcAGCAGCGAgGCCAcgGCCGCc -3'
miRNA:   3'- -GCCU----UGAC-UCGUUGUUgCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 197402 0.8 0.560692
Target:  5'- cCGGGACUGGGUGucuggccACGACGCCGAaaGCg -3'
miRNA:   3'- -GCCUUGACUCGU-------UGUUGCGGUUggCG- -5'
13965 5' -51.8 NC_003521.1 + 75531 0.8 0.561693
Target:  5'- aGGAGCUGuGUcaguucAGCGGCGCCGGCgGCg -3'
miRNA:   3'- gCCUUGACuCG------UUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 226156 0.79 0.568714
Target:  5'- -cGAGCgcGAGCGGCAGCGCCAgacgcgcauggagcACCGCa -3'
miRNA:   3'- gcCUUGa-CUCGUUGUUGCGGU--------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 112877 0.79 0.57173
Target:  5'- cCGcGGCUGGcCGACGACGUCAGCCGCg -3'
miRNA:   3'- -GCcUUGACUcGUUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 92001 0.79 0.57173
Target:  5'- aCGGAGCggGAGCGGCGAgGCgCGGCgGCg -3'
miRNA:   3'- -GCCUUGa-CUCGUUGUUgCG-GUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 38752 0.79 0.581808
Target:  5'- uCGGGGCUcGAGUAAgAACGCCGgcgcccACCGCc -3'
miRNA:   3'- -GCCUUGA-CUCGUUgUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 117510 0.79 0.581808
Target:  5'- gCGGGAU--GGCGGCGGCGCCGggaGCCGCc -3'
miRNA:   3'- -GCCUUGacUCGUUGUUGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 132257 0.78 0.622411
Target:  5'- uGGAccacCUGGGCcGCAACGCCAACCu- -3'
miRNA:   3'- gCCUu---GACUCGuUGUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 54578 0.78 0.629542
Target:  5'- uGGuGACgGAGCAcgacgcgcugcucuACGugGCCAGCCGCa -3'
miRNA:   3'- gCC-UUGaCUCGU--------------UGUugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 224562 0.78 0.632599
Target:  5'- aGGAACc-AGCGGCAGCGC-AGCCGCa -3'
miRNA:   3'- gCCUUGacUCGUUGUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 30495 0.78 0.642786
Target:  5'- gCGGAcCUGcAGC-GCGACGCCAACgGCc -3'
miRNA:   3'- -GCCUuGAC-UCGuUGUUGCGGUUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.