miRNA display CGI


Results 21 - 40 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 19982 0.68 0.989879
Target:  5'- uGGGACUGuGUu-CGugGCUGGCgGCg -3'
miRNA:   3'- gCCUUGACuCGuuGUugCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 22753 0.72 0.911892
Target:  5'- uGGucaugacGCUGAaaccuuGCGAUAGCGCCAcCCGCu -3'
miRNA:   3'- gCCu------UGACU------CGUUGUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 22880 0.67 0.992208
Target:  5'- uGGGugUcccGGGCAACGGaggucaGgCGACCGCa -3'
miRNA:   3'- gCCUugA---CUCGUUGUUg-----CgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 23884 0.72 0.911298
Target:  5'- uGGGuccgGGGCAACAGCGUaugggguCGACCGCc -3'
miRNA:   3'- gCCUuga-CUCGUUGUUGCG-------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 25541 0.66 0.995588
Target:  5'- aGGGA--GAGCGACGgcggACGCUguugugcaggcGGCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGU----UGCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 25783 0.66 0.996761
Target:  5'- aGGGGCUccacgcGGCuGCAGCccaccaucagcuGCCAGCCGUa -3'
miRNA:   3'- gCCUUGAc-----UCGuUGUUG------------CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 26461 0.68 0.985403
Target:  5'- cCGGAuacCUGuGCuGCAGCGagCGGCUGCg -3'
miRNA:   3'- -GCCUu--GACuCGuUGUUGCg-GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 26473 0.69 0.977261
Target:  5'- aCGGAGgaGAGaAACGACGUCcACgGCg -3'
miRNA:   3'- -GCCUUgaCUCgUUGUUGCGGuUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 26528 0.66 0.995588
Target:  5'- cCGGugcCUGGgguGCAGCAGCGCUggcguuccGugCGCg -3'
miRNA:   3'- -GCCuu-GACU---CGUUGUUGCGG--------UugGCG- -5'
13965 5' -51.8 NC_003521.1 + 26531 0.73 0.893063
Target:  5'- aCGGAGCcaagGAGCGuCGACGCUuuauGCCaGCg -3'
miRNA:   3'- -GCCUUGa---CUCGUuGUUGCGGu---UGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 27856 0.68 0.988526
Target:  5'- uCGaGGACggaGAGCAgaccGCAucggaguccgacGCGUCGACCGCc -3'
miRNA:   3'- -GC-CUUGa--CUCGU----UGU------------UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 27994 0.68 0.983049
Target:  5'- gCGGcAGCgUGAGCGGCAccuCGCUGuccuccuccagcacGCCGCg -3'
miRNA:   3'- -GCC-UUG-ACUCGUUGUu--GCGGU--------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 29136 0.71 0.951767
Target:  5'- cCGuGAGCUuGGGCGACucgaccgugccGCGCC-GCCGCa -3'
miRNA:   3'- -GC-CUUGA-CUCGUUGu----------UGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 29229 0.77 0.723279
Target:  5'- uGGAgauccucuACUGGGCcuccagccgcGGCGACGaCCAGCCGCu -3'
miRNA:   3'- gCCU--------UGACUCG----------UUGUUGC-GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 29392 0.68 0.989879
Target:  5'- uGGuGCUGGauGUAGCAGCG-CAGCgCGCg -3'
miRNA:   3'- gCCuUGACU--CGUUGUUGCgGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 30495 0.78 0.642786
Target:  5'- gCGGAcCUGcAGC-GCGACGCCAACgGCc -3'
miRNA:   3'- -GCCUuGAC-UCGuUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 30574 0.66 0.996761
Target:  5'- uCGGggUaGGGCAGgucCAAgUGCCGuCCGCg -3'
miRNA:   3'- -GCCuuGaCUCGUU---GUU-GCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 30997 0.74 0.84942
Target:  5'- uCGGGAUgGGGCGACGacgGCGCCGGCgaggaCGCg -3'
miRNA:   3'- -GCCUUGaCUCGUUGU---UGCGGUUG-----GCG- -5'
13965 5' -51.8 NC_003521.1 + 31128 1.12 0.007413
Target:  5'- gCGGAACUGAGCAACAACGCCAACCGCu -3'
miRNA:   3'- -GCCUUGACUCGUUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 31437 0.67 0.991104
Target:  5'- gCGGA--UGAuGC-GCAGCGCCAGCacgGCg -3'
miRNA:   3'- -GCCUugACU-CGuUGUUGCGGUUGg--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.