miRNA display CGI


Results 21 - 40 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 31128 1.12 0.007413
Target:  5'- gCGGAACUGAGCAACAACGCCAACCGCu -3'
miRNA:   3'- -GCCUUGACUCGUUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 218673 0.73 0.864812
Target:  5'- uGGccauGCUGcGCGGCGugGCCGaguACCGCc -3'
miRNA:   3'- gCCu---UGACuCGUUGUugCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 131346 0.74 0.857217
Target:  5'- cCGGAGCccgcgcGAGCcGCGGuCGCCGccACCGCg -3'
miRNA:   3'- -GCCUUGa-----CUCGuUGUU-GCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 43832 0.75 0.816349
Target:  5'- aGGAGCgGuGCuugacGCGGCGCCGGCgGCg -3'
miRNA:   3'- gCCUUGaCuCGu----UGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 196417 0.76 0.761946
Target:  5'- aGGAGCcacaUGAGaaCGGCAGCGCCAGCaGCg -3'
miRNA:   3'- gCCUUG----ACUC--GUUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 117375 0.73 0.872199
Target:  5'- gCGGcGGCUGAGCGGCGgagGCGgCCucguCCGCu -3'
miRNA:   3'- -GCC-UUGACUCGUUGU---UGC-GGuu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 101826 0.73 0.864812
Target:  5'- gCGGAGCgggGGGaCGACGACGCCGucgUCGUc -3'
miRNA:   3'- -GCCUUGa--CUC-GUUGUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 30495 0.78 0.642786
Target:  5'- gCGGAcCUGcAGC-GCGACGCCAACgGCc -3'
miRNA:   3'- -GCCUuGAC-UCGuUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 153837 0.74 0.841428
Target:  5'- aGGuggugGAGCGGCuguGCGCCGugCGCg -3'
miRNA:   3'- gCCuuga-CUCGUUGu--UGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 138116 0.74 0.824885
Target:  5'- uCGGGGCUcuGGCGggGCGGC-CCAGCCGCg -3'
miRNA:   3'- -GCCUUGAc-UCGU--UGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 117510 0.79 0.581808
Target:  5'- gCGGGAU--GGCGGCGGCGCCGggaGCCGCc -3'
miRNA:   3'- -GCCUUGacUCGUUGUUGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 38752 0.79 0.581808
Target:  5'- uCGGGGCUcGAGUAAgAACGCCGgcgcccACCGCc -3'
miRNA:   3'- -GCCUUGA-CUCGUUgUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 141135 0.73 0.879374
Target:  5'- aGGg---GGGCGGCGGCGCCucggccgaGACCGCg -3'
miRNA:   3'- gCCuugaCUCGUUGUUGCGG--------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 142926 0.73 0.872199
Target:  5'- uCGcuGCUGA-CGGCGcuGCGCCGACCGCu -3'
miRNA:   3'- -GCcuUGACUcGUUGU--UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 139642 0.74 0.857217
Target:  5'- gCGGGGCcaaGAGCAcgGCGcucuuCGCCAGCUGCu -3'
miRNA:   3'- -GCCUUGa--CUCGU--UGUu----GCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 91972 0.75 0.780631
Target:  5'- uCGGAAg-GAGCGGC-ACGCaGACCGCa -3'
miRNA:   3'- -GCCUUgaCUCGUUGuUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 5815 0.76 0.761946
Target:  5'- aCGGAACaacgaUGgcGGCGGCcGCGCCGGCUGCc -3'
miRNA:   3'- -GCCUUG-----AC--UCGUUGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226156 0.79 0.568714
Target:  5'- -cGAGCgcGAGCGGCAGCGCCAgacgcgcauggagcACCGCa -3'
miRNA:   3'- gcCUUGa-CUCGUUGUUGCGGU--------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 127053 0.74 0.824885
Target:  5'- gCGGAGCUGGaccacGC-GCAGCGCCAggGCCuGCc -3'
miRNA:   3'- -GCCUUGACU-----CGuUGUUGCGGU--UGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 196789 0.74 0.84942
Target:  5'- gGGAGCUGGGCGgguuGCuGugGCC-GCUGCg -3'
miRNA:   3'- gCCUUGACUCGU----UG-UugCGGuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.