miRNA display CGI


Results 41 - 60 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 135774 0.66 0.997663
Target:  5'- gGGGACgccGC-GCGACGUC-GCCGCu -3'
miRNA:   3'- gCCUUGacuCGuUGUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 204503 0.66 0.997663
Target:  5'- gCGcGAACUGgccuGGCGGCggGugGCCGACgacuCGCa -3'
miRNA:   3'- -GC-CUUGAC----UCGUUG--UugCGGUUG----GCG- -5'
13965 5' -51.8 NC_003521.1 + 53730 0.66 0.997663
Target:  5'- aGGAGCgcucGCugGAgGACGCCcuGGCCGCc -3'
miRNA:   3'- gCCUUGacu-CG--UUgUUGCGG--UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 210124 0.66 0.997663
Target:  5'- aCGGGACUcGGCGcuACGAgGUagagcuGCCGCa -3'
miRNA:   3'- -GCCUUGAcUCGU--UGUUgCGgu----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 132266 0.66 0.997663
Target:  5'- aCGGGAuCUG-GUAcgaauugcGCAGCuCCAGCUGCg -3'
miRNA:   3'- -GCCUU-GACuCGU--------UGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 51926 0.66 0.997663
Target:  5'- aCGGAuuuCUGAcGCAGCAACcCCcaccCCGUc -3'
miRNA:   3'- -GCCUu--GACU-CGUUGUUGcGGuu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 232711 0.66 0.997663
Target:  5'- uGGAGaucuacgaUGGGCAGaCGACuCCgAGCCGCu -3'
miRNA:   3'- gCCUUg-------ACUCGUU-GUUGcGG-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 35964 0.66 0.997663
Target:  5'- gCGGAGgaUGGGCGACGaggACGaCgAACCGg -3'
miRNA:   3'- -GCCUUg-ACUCGUUGU---UGC-GgUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 42930 0.66 0.997663
Target:  5'- aGGuGAC-GAGCAACAucCGCU-GCCGCc -3'
miRNA:   3'- gCC-UUGaCUCGUUGUu-GCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 67676 0.66 0.997663
Target:  5'- uGGAGCUGaAGCccAAguACGCCGAggucuacgccuCCGUc -3'
miRNA:   3'- gCCUUGAC-UCG--UUguUGCGGUU-----------GGCG- -5'
13965 5' -51.8 NC_003521.1 + 190960 0.66 0.997623
Target:  5'- aCGGAugaUGGGCAcuuacuuGCAcCGCCAccuggacgGCCGUc -3'
miRNA:   3'- -GCCUug-ACUCGU-------UGUuGCGGU--------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 106605 0.66 0.997623
Target:  5'- aGGAcCgUGAGCAucgugggACGAUGCCAAagGCg -3'
miRNA:   3'- gCCUuG-ACUCGU-------UGUUGCGGUUggCG- -5'
13965 5' -51.8 NC_003521.1 + 232185 0.66 0.997623
Target:  5'- uGGuAGCUG-GCuACGGCGCgGgagaagaGCCGCu -3'
miRNA:   3'- gCC-UUGACuCGuUGUUGCGgU-------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 70127 0.66 0.997623
Target:  5'- uGGcGCUGcGCGgcggccucaucgGCAGCGUCAucgaccuGCCGCu -3'
miRNA:   3'- gCCuUGACuCGU------------UGUUGCGGU-------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 55559 0.66 0.997623
Target:  5'- gGGAAguagcacucgcggUUGAGCGgacACAGCGaCCAcACCGUc -3'
miRNA:   3'- gCCUU-------------GACUCGU---UGUUGC-GGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 116882 0.66 0.997623
Target:  5'- aGGAACUccaccaccuugucGGGCcGCAGCGaCUugcagggagGGCCGCg -3'
miRNA:   3'- gCCUUGA-------------CUCGuUGUUGC-GG---------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 99594 0.66 0.997242
Target:  5'- -aGAACUGcGGCGcguuggugaccuGCAGCGCCcGGCgGCg -3'
miRNA:   3'- gcCUUGAC-UCGU------------UGUUGCGG-UUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 63141 0.66 0.997242
Target:  5'- uGGAGC--AGCAGCuGCGCgGGCUGa -3'
miRNA:   3'- gCCUUGacUCGUUGuUGCGgUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 120601 0.66 0.997242
Target:  5'- cCGaAGC--AGCAGCAGCgGCC-ACCGCa -3'
miRNA:   3'- -GCcUUGacUCGUUGUUG-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 168539 0.66 0.997242
Target:  5'- gCGGccAGCgcGGCGGCGGCGCUggcgGGCUGCg -3'
miRNA:   3'- -GCC--UUGacUCGUUGUUGCGG----UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.