miRNA display CGI


Results 41 - 60 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 31567 0.67 0.991889
Target:  5'- aGGGACUcGcGCAgaaccccguGCAACGCCGGgaacugucgcgguuCCGCa -3'
miRNA:   3'- gCCUUGA-CuCGU---------UGUUGCGGUU--------------GGCG- -5'
13965 5' -51.8 NC_003521.1 + 31702 0.69 0.975798
Target:  5'- uGGGGCggcGGCAGCAugugcgcgugcugggACGCCGcggccACCGCc -3'
miRNA:   3'- gCCUUGac-UCGUUGU---------------UGCGGU-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 31760 0.67 0.994091
Target:  5'- aCGG-GCUGGGC--CugUGCCAACcCGCg -3'
miRNA:   3'- -GCCuUGACUCGuuGuuGCGGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 31872 0.69 0.977261
Target:  5'- gCGGuGC-GAGCGguaccGCAcCGCCAgGCCGCg -3'
miRNA:   3'- -GCCuUGaCUCGU-----UGUuGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 31909 0.73 0.879374
Target:  5'- aGGAACUGcGGCAgGCAGCGCgCGAugacUCGCg -3'
miRNA:   3'- gCCUUGAC-UCGU-UGUUGCG-GUU----GGCG- -5'
13965 5' -51.8 NC_003521.1 + 31956 0.66 0.996211
Target:  5'- aGGAACaG-GCAcAUggUGCCGuccaGCCGCa -3'
miRNA:   3'- gCCUUGaCuCGU-UGuuGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 32239 0.66 0.997663
Target:  5'- aGGAGCUGuacauGCGGCugGACGgcaCCAugUGCc -3'
miRNA:   3'- gCCUUGACu----CGUUG--UUGC---GGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 33162 0.67 0.991104
Target:  5'- gGGGGCggcGGGCAcggcgGCAGCaCCGGCgGCg -3'
miRNA:   3'- gCCUUGa--CUCGU-----UGUUGcGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 33320 0.69 0.974785
Target:  5'- uGGAcccGCUGGGCGGCAuccACGU--GCUGCu -3'
miRNA:   3'- gCCU---UGACUCGUUGU---UGCGguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 33429 0.7 0.966186
Target:  5'- uGGAACguggccGAGgcCGACGAgGCCAACgGCu -3'
miRNA:   3'- gCCUUGa-----CUC--GUUGUUgCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 33472 0.69 0.977261
Target:  5'- cCGu--CUGGGCGGCu-CGCCGGCCuGCa -3'
miRNA:   3'- -GCcuuGACUCGUUGuuGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 33514 0.72 0.923277
Target:  5'- cCGGccuGCUG-GCGugugccagcuCAACGCCGGCUGCa -3'
miRNA:   3'- -GCCu--UGACuCGUu---------GUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 33649 0.7 0.969254
Target:  5'- aGGGGCggccagcaGAGCGGgaucCAGCGaCCGGCCGUg -3'
miRNA:   3'- gCCUUGa-------CUCGUU----GUUGC-GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 33886 0.66 0.995588
Target:  5'- aCGGccuguuGCUGGGCGACAGCaacuauuucgggGUgGugCGCg -3'
miRNA:   3'- -GCCu-----UGACUCGUUGUUG------------CGgUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 34493 0.73 0.864812
Target:  5'- gCGGaAGCaGAGCAGCgAGCGCagguagCGGCCGCg -3'
miRNA:   3'- -GCC-UUGaCUCGUUG-UUGCG------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 35136 0.66 0.997663
Target:  5'- cCGcGACUGAGCGcgGguGCGCCA--CGCg -3'
miRNA:   3'- -GCcUUGACUCGU--UguUGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 35298 0.67 0.994091
Target:  5'- aCGGca-UGAGCGu--GC-CCAACCGCg -3'
miRNA:   3'- -GCCuugACUCGUuguUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 35369 0.71 0.942755
Target:  5'- aGGAACgacGccgagucccccucGGCGAgGACGCgGGCCGCg -3'
miRNA:   3'- gCCUUGa--C-------------UCGUUgUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 35964 0.66 0.997663
Target:  5'- gCGGAGgaUGGGCGACGaggACGaCgAACCGg -3'
miRNA:   3'- -GCCUUg-ACUCGUUGU---UGC-GgUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 36477 0.72 0.917703
Target:  5'- uCGGggUccaUGuGGCGACAGCGUUugAGCCGCu -3'
miRNA:   3'- -GCCuuG---AC-UCGUUGUUGCGG--UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.