miRNA display CGI


Results 41 - 60 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 69484 0.73 0.864812
Target:  5'- gCGGAACccGAGCGGCGGCGggaguGCCGCc -3'
miRNA:   3'- -GCCUUGa-CUCGUUGUUGCggu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 164750 0.75 0.788871
Target:  5'- gCGGAggcgacggugacgGCUGcggcGGCGGCAGCGgCGACCGUg -3'
miRNA:   3'- -GCCU-------------UGAC----UCGUUGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 195891 0.8 0.5319
Target:  5'- uCGGAGCUGcAGCAACGcgaccagcuggcGgGCCGGCUGCg -3'
miRNA:   3'- -GCCUUGAC-UCGUUGU------------UgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 101826 0.73 0.864812
Target:  5'- gCGGAGCgggGGGaCGACGACGCCGucgUCGUc -3'
miRNA:   3'- -GCCUUGa--CUC-GUUGUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 130629 0.83 0.419831
Target:  5'- uGGcGCUGAGCGcgcACGGCGCCugcGGCCGCa -3'
miRNA:   3'- gCCuUGACUCGU---UGUUGCGG---UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56705 0.72 0.899571
Target:  5'- uCGGAcCUGGGCcACGAgGCggccuuCGACCGCg -3'
miRNA:   3'- -GCCUuGACUCGuUGUUgCG------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226156 0.79 0.568714
Target:  5'- -cGAGCgcGAGCGGCAGCGCCAgacgcgcauggagcACCGCa -3'
miRNA:   3'- gcCUUGa-CUCGUUGUUGCGGU--------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 85679 0.72 0.899571
Target:  5'- gGGGGCUGGGCAcCGGagGCCuGCUGCc -3'
miRNA:   3'- gCCUUGACUCGUuGUUg-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 75878 0.73 0.893063
Target:  5'- uCGGcGACUGAGCcgUGGCGCCGcCCGa -3'
miRNA:   3'- -GCC-UUGACUCGuuGUUGCGGUuGGCg -5'
13965 5' -51.8 NC_003521.1 + 61137 0.73 0.88633
Target:  5'- cCGaGAACUGcGGCAcCAGCaCCAGCUGCg -3'
miRNA:   3'- -GC-CUUGAC-UCGUuGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 74871 0.73 0.879374
Target:  5'- uGGcGC--GGCGGCGaggcGCGCCGGCCGCg -3'
miRNA:   3'- gCCuUGacUCGUUGU----UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56378 0.73 0.875095
Target:  5'- uGGuGCUGGGCAauacGCGACGCUAcuucgaucugcgcguGCUGCg -3'
miRNA:   3'- gCCuUGACUCGU----UGUUGCGGU---------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 225867 0.73 0.872199
Target:  5'- uGGGGCUGcaGGCGGCcgAGCGCgaGGCCGCc -3'
miRNA:   3'- gCCUUGAC--UCGUUG--UUGCGg-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 131346 0.74 0.857217
Target:  5'- cCGGAGCccgcgcGAGCcGCGGuCGCCGccACCGCg -3'
miRNA:   3'- -GCCUUGa-----CUCGuUGUU-GCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 101787 0.74 0.84942
Target:  5'- aCGGAGCUGcAGCGccuGCug-GUCGGCCGCg -3'
miRNA:   3'- -GCCUUGAC-UCGU---UGuugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 138116 0.74 0.824885
Target:  5'- uCGGGGCUcuGGCGggGCGGC-CCAGCCGCg -3'
miRNA:   3'- -GCCUUGAc-UCGU--UGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 116222 0.75 0.816349
Target:  5'- uCGGAcaacgccguACUGAGCcGCAagACGCCccAACCGUa -3'
miRNA:   3'- -GCCU---------UGACUCGuUGU--UGCGG--UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239231 0.76 0.77135
Target:  5'- cCGGGACgGGGCc-CGGCGCCucuaauACCGCa -3'
miRNA:   3'- -GCCUUGaCUCGuuGUUGCGGu-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 204211 0.76 0.742804
Target:  5'- cCGGAuUUGAGCGAgGGCGUCAggcaGCCGUg -3'
miRNA:   3'- -GCCUuGACUCGUUgUUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 54578 0.78 0.629542
Target:  5'- uGGuGACgGAGCAcgacgcgcugcucuACGugGCCAGCCGCa -3'
miRNA:   3'- gCC-UUGaCUCGU--------------UGUugCGGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.