miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 150903 0.67 0.960674
Target:  5'- gGCGUCaUCGaCUGCGCGcccuUCcacggcgugugggccGAGCGCGGu -3'
miRNA:   3'- -CGUAG-AGC-GACGCGU----AG---------------UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 154926 0.67 0.959259
Target:  5'- aGCGUCUCGCUGCcgGCcUC-GGCcaGCGGc -3'
miRNA:   3'- -CGUAGAGCGACG--CGuAGuUCG--CGCUc -5'
13966 3' -54.3 NC_003521.1 + 144291 0.67 0.959259
Target:  5'- gGCGaCUCGCUGCuGCcgCAcGCGCu-- -3'
miRNA:   3'- -CGUaGAGCGACG-CGuaGUuCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 35179 0.67 0.959259
Target:  5'- cGCcgCUaccUGCUGCGCuUCGAGgGCGc- -3'
miRNA:   3'- -CGuaGA---GCGACGCGuAGUUCgCGCuc -5'
13966 3' -54.3 NC_003521.1 + 35904 0.67 0.95557
Target:  5'- uGCcgCUCGCaGCGCGUgCGGGaccuGCGAa -3'
miRNA:   3'- -CGuaGAGCGaCGCGUA-GUUCg---CGCUc -5'
13966 3' -54.3 NC_003521.1 + 125018 0.68 0.951661
Target:  5'- cGCAgCagGCUGCGCAUC---CGCGGGu -3'
miRNA:   3'- -CGUaGagCGACGCGUAGuucGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 128320 0.68 0.949208
Target:  5'- gGCAUCg-GCgGCGCGUCggccacuucuaccgcGugcGGCGCGAGg -3'
miRNA:   3'- -CGUAGagCGaCGCGUAG---------------U---UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 35149 0.68 0.947527
Target:  5'- uGCGUCUCGCUGgGCuggcccUCGcAGUGCu-- -3'
miRNA:   3'- -CGUAGAGCGACgCGu-----AGU-UCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 101663 0.68 0.947527
Target:  5'- cGCGUCUCGaUGaaguugGCGUCGGGCGaGGGg -3'
miRNA:   3'- -CGUAGAGCgACg-----CGUAGUUCGCgCUC- -5'
13966 3' -54.3 NC_003521.1 + 67822 0.68 0.947527
Target:  5'- aGCAUC-CGC-GUGCAgcggCAGGaaCGCGAGa -3'
miRNA:   3'- -CGUAGaGCGaCGCGUa---GUUC--GCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 195363 0.68 0.947102
Target:  5'- gGCGUCU-GCgggacGCGgGUCAggccggguuuuguAGCGCGAGa -3'
miRNA:   3'- -CGUAGAgCGa----CGCgUAGU-------------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 128452 0.68 0.946243
Target:  5'- aGCG-CUCGCccagGCGgAUCAcguccaugggcagcGGCGUGAGg -3'
miRNA:   3'- -CGUaGAGCGa---CGCgUAGU--------------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 232668 0.68 0.943167
Target:  5'- gGCGUUgccgugcCGCagGCGCAgCcAGCGCGAGa -3'
miRNA:   3'- -CGUAGa------GCGa-CGCGUaGuUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 55790 0.68 0.943167
Target:  5'- cGCGgcgCUCGCUGCGCGUacc-CGUGGu -3'
miRNA:   3'- -CGUa--GAGCGACGCGUAguucGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 77772 0.68 0.943167
Target:  5'- uGUAg-UCGCggcagGCGCAcucgUCAAGCaGCGAGg -3'
miRNA:   3'- -CGUagAGCGa----CGCGU----AGUUCG-CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 30594 0.68 0.943167
Target:  5'- cGCcgaCUCGCUgGCGCAguugcUgGAGCGCGGu -3'
miRNA:   3'- -CGua-GAGCGA-CGCGU-----AgUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 32180 0.68 0.943167
Target:  5'- cCAUCgaaagUGCUGCGgGUCGGGCaugGUGGGg -3'
miRNA:   3'- cGUAGa----GCGACGCgUAGUUCG---CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 225873 0.68 0.938577
Target:  5'- aCAUCgugggGCUGCagGCGgcCGAGCGCGAGg -3'
miRNA:   3'- cGUAGag---CGACG--CGUa-GUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 140372 0.68 0.938577
Target:  5'- gGCGg--CGCUGUGUcgCAAGCGCu-- -3'
miRNA:   3'- -CGUagaGCGACGCGuaGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 89254 0.68 0.938106
Target:  5'- gGCAUUUCuguaccugaccaaGCUGgGCGaCGAGaCGCGAGa -3'
miRNA:   3'- -CGUAGAG-------------CGACgCGUaGUUC-GCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.