Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13966 | 3' | -54.3 | NC_003521.1 | + | 136089 | 0.66 | 0.974561 |
Target: 5'- cGCuggagggCUCGgUGUGCGUCAAGaCGgGAc -3' miRNA: 3'- -CGua-----GAGCgACGCGUAGUUC-GCgCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 70481 | 0.66 | 0.974561 |
Target: 5'- -----cUGCUGCGCGcCAAGCGCuucGAGg -3' miRNA: 3'- cguagaGCGACGCGUaGUUCGCG---CUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 55370 | 0.67 | 0.972176 |
Target: 5'- cGCGUCUCGCcggGUGCGgaggugaucgccgagCGGGUGCGc- -3' miRNA: 3'- -CGUAGAGCGa--CGCGUa--------------GUUCGCGCuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 144083 | 0.67 | 0.971902 |
Target: 5'- cGCAcgaUCUCGCUGgGguU---GCGCGGGu -3' miRNA: 3'- -CGU---AGAGCGACgCguAguuCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 234133 | 0.67 | 0.971347 |
Target: 5'- aGCAgcgCUCGCggGCGCAggcccugcagcaCGAGCGgGAc -3' miRNA: 3'- -CGUa--GAGCGa-CGCGUa-----------GUUCGCgCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 110363 | 0.67 | 0.970213 |
Target: 5'- aGCAggagCGCUgGCGCGUCGucgaucgucgcccguAGUGCGAa -3' miRNA: 3'- -CGUaga-GCGA-CGCGUAGU---------------UCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 101666 | 0.67 | 0.969047 |
Target: 5'- cGCAcgggcUCUC-CUGCGUggccGUCAagcGGCGCGAc -3' miRNA: 3'- -CGU-----AGAGcGACGCG----UAGU---UCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 43166 | 0.67 | 0.969047 |
Target: 5'- -gAUCUCGCUGgGCuccagAUCGacgGGCGCGc- -3' miRNA: 3'- cgUAGAGCGACgCG-----UAGU---UCGCGCuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 102321 | 0.67 | 0.969047 |
Target: 5'- gGCAUCgUCGUcgUGCGCGU-GGGCGcCGAc -3' miRNA: 3'- -CGUAG-AGCG--ACGCGUAgUUCGC-GCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 191796 | 0.67 | 0.969047 |
Target: 5'- aGCAUaaaUGCcaGCGCGUCGAGCGCc-- -3' miRNA: 3'- -CGUAga-GCGa-CGCGUAGUUCGCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 42139 | 0.67 | 0.969047 |
Target: 5'- gGCAguggagGUUGgGCAcCAGGCGCGAGa -3' miRNA: 3'- -CGUagag--CGACgCGUaGUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 27930 | 0.67 | 0.969047 |
Target: 5'- cGCG-CUCGCUcGUGUGUCugucccacguGCGCGGGu -3' miRNA: 3'- -CGUaGAGCGA-CGCGUAGuu--------CGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 29460 | 0.67 | 0.969047 |
Target: 5'- gGUA-CUCGUUGCGCAgCGAGgGCa-- -3' miRNA: 3'- -CGUaGAGCGACGCGUaGUUCgCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 70195 | 0.67 | 0.965993 |
Target: 5'- gGCGUCcggCGUcGCGaagCAGGCGCGAc -3' miRNA: 3'- -CGUAGa--GCGaCGCguaGUUCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 129693 | 0.67 | 0.962732 |
Target: 5'- --uUCgaggCGCUGCGCAUCuacuacGGCGaCGAc -3' miRNA: 3'- cguAGa---GCGACGCGUAGu-----UCGC-GCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 200687 | 0.67 | 0.962732 |
Target: 5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3' miRNA: 3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 240628 | 0.67 | 0.962732 |
Target: 5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3' miRNA: 3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 90038 | 0.67 | 0.962732 |
Target: 5'- gGCggCUCGCgcccGCcCGUCGucGCGCGAGc -3' miRNA: 3'- -CGuaGAGCGa---CGcGUAGUu-CGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 79 | 0.67 | 0.962732 |
Target: 5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3' miRNA: 3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 30166 | 0.67 | 0.962732 |
Target: 5'- gGCGUCacgCGUUGuCGCAUgAGcGCGCGGu -3' miRNA: 3'- -CGUAGa--GCGAC-GCGUAgUU-CGCGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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