miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 101984 0.66 0.979323
Target:  5'- cCAUCUCGCccccgccGCGCAUCGugcugAGCGUa-- -3'
miRNA:   3'- cGUAGAGCGa------CGCGUAGU-----UCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 166265 0.66 0.981439
Target:  5'- aGCAggCUCGC-GUGUuuuGUCuGAGCGCGAc -3'
miRNA:   3'- -CGUa-GAGCGaCGCG---UAG-UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 144083 0.67 0.971902
Target:  5'- cGCAcgaUCUCGCUGgGguU---GCGCGGGu -3'
miRNA:   3'- -CGU---AGAGCGACgCguAguuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 200687 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5'
13966 3' -54.3 NC_003521.1 + 42139 0.67 0.969047
Target:  5'- gGCAguggagGUUGgGCAcCAGGCGCGAGa -3'
miRNA:   3'- -CGUagag--CGACgCGUaGUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 35179 0.67 0.959259
Target:  5'- cGCcgCUaccUGCUGCGCuUCGAGgGCGc- -3'
miRNA:   3'- -CGuaGA---GCGACGCGuAGUUCgCGCuc -5'
13966 3' -54.3 NC_003521.1 + 154926 0.67 0.959259
Target:  5'- aGCGUCUCGCUGCcgGCcUC-GGCcaGCGGc -3'
miRNA:   3'- -CGUAGAGCGACG--CGuAGuUCG--CGCUc -5'
13966 3' -54.3 NC_003521.1 + 110363 0.67 0.970213
Target:  5'- aGCAggagCGCUgGCGCGUCGucgaucgucgcccguAGUGCGAa -3'
miRNA:   3'- -CGUaga-GCGA-CGCGUAGU---------------UCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 102321 0.67 0.969047
Target:  5'- gGCAUCgUCGUcgUGCGCGU-GGGCGcCGAc -3'
miRNA:   3'- -CGUAG-AGCG--ACGCGUAgUUCGC-GCUc -5'
13966 3' -54.3 NC_003521.1 + 240628 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5'
13966 3' -54.3 NC_003521.1 + 129693 0.67 0.962732
Target:  5'- --uUCgaggCGCUGCGCAUCuacuacGGCGaCGAc -3'
miRNA:   3'- cguAGa---GCGACGCGUAGu-----UCGC-GCUc -5'
13966 3' -54.3 NC_003521.1 + 191796 0.67 0.969047
Target:  5'- aGCAUaaaUGCcaGCGCGUCGAGCGCc-- -3'
miRNA:   3'- -CGUAga-GCGa-CGCGUAGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 55370 0.67 0.972176
Target:  5'- cGCGUCUCGCcggGUGCGgaggugaucgccgagCGGGUGCGc- -3'
miRNA:   3'- -CGUAGAGCGa--CGCGUa--------------GUUCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 70195 0.67 0.965993
Target:  5'- gGCGUCcggCGUcGCGaagCAGGCGCGAc -3'
miRNA:   3'- -CGUAGa--GCGaCGCguaGUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 101666 0.67 0.969047
Target:  5'- cGCAcgggcUCUC-CUGCGUggccGUCAagcGGCGCGAc -3'
miRNA:   3'- -CGU-----AGAGcGACGCG----UAGU---UCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 144291 0.67 0.959259
Target:  5'- gGCGaCUCGCUGCuGCcgCAcGCGCu-- -3'
miRNA:   3'- -CGUaGAGCGACG-CGuaGUuCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 150903 0.67 0.960674
Target:  5'- gGCGUCaUCGaCUGCGCGcccuUCcacggcgugugggccGAGCGCGGu -3'
miRNA:   3'- -CGUAG-AGC-GACGCGU----AG---------------UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 30166 0.67 0.962732
Target:  5'- gGCGUCacgCGUUGuCGCAUgAGcGCGCGGu -3'
miRNA:   3'- -CGUAGa--GCGAC-GCGUAgUU-CGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 79 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5'
13966 3' -54.3 NC_003521.1 + 90038 0.67 0.962732
Target:  5'- gGCggCUCGCgcccGCcCGUCGucGCGCGAGc -3'
miRNA:   3'- -CGuaGAGCGa---CGcGUAGUu-CGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.