miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 221619 0.71 0.826124
Target:  5'- cCAUgUCGCUGCGCGgcCAGGUGCa-- -3'
miRNA:   3'- cGUAgAGCGACGCGUa-GUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 145299 0.71 0.842474
Target:  5'- gGCGUCUCGCcGgGCAUCcaguucggccugAAGCaCGAGg -3'
miRNA:   3'- -CGUAGAGCGaCgCGUAG------------UUCGcGCUC- -5'
13966 3' -54.3 NC_003521.1 + 56158 0.71 0.849592
Target:  5'- uGCugCUCGCUGCGCG-CGaacacgcAGCGCGAc -3'
miRNA:   3'- -CGuaGAGCGACGCGUaGU-------UCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 90319 0.71 0.850373
Target:  5'- cGCGUgUgCGCUcGCGCGacgacgggCGGGCGCGAGc -3'
miRNA:   3'- -CGUAgA-GCGA-CGCGUa-------GUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 67564 0.71 0.85808
Target:  5'- uGCAgaaCUCGUcGgGCGUCAGGCGCa-- -3'
miRNA:   3'- -CGUa--GAGCGaCgCGUAGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 152260 0.7 0.865587
Target:  5'- uGCAcuUCUCGCUGUGCAccauccucUCGuGCGUaGAGa -3'
miRNA:   3'- -CGU--AGAGCGACGCGU--------AGUuCGCG-CUC- -5'
13966 3' -54.3 NC_003521.1 + 201517 0.7 0.879983
Target:  5'- cCAUCUgGCUGCGCggCGugauGCGCGc- -3'
miRNA:   3'- cGUAGAgCGACGCGuaGUu---CGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 239798 0.7 0.879983
Target:  5'- cCAUCUgGCUGCGCggCGugauGCGCGc- -3'
miRNA:   3'- cGUAGAgCGACGCGuaGUu---CGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 117981 0.7 0.88276
Target:  5'- aGCG-CUacgacgaGCUGCGCGacgccauccacgagcUCAAGCGCGAu -3'
miRNA:   3'- -CGUaGAg------CGACGCGU---------------AGUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 42942 0.7 0.89352
Target:  5'- aCAUC-CGCUGCcgccuGCAgcccagCGAGCGCGAc -3'
miRNA:   3'- cGUAGaGCGACG-----CGUa-----GUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 128767 0.69 0.912147
Target:  5'- aGCGaCUCGCUGuCGCAggCcGGCGCGc- -3'
miRNA:   3'- -CGUaGAGCGAC-GCGUa-GuUCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 213901 0.69 0.912147
Target:  5'- aGCGagUCGCgaGCGUGUCugGAGCGCGGu -3'
miRNA:   3'- -CGUagAGCGa-CGCGUAG--UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 180546 0.69 0.912147
Target:  5'- cCGUCUcCGCgGCGUAcCGggguGGCGCGAGa -3'
miRNA:   3'- cGUAGA-GCGaCGCGUaGU----UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 110639 0.69 0.915626
Target:  5'- gGCAUCUCGCcggGCGCcggcacgGUCAcggcccggucggccAGCGCGu- -3'
miRNA:   3'- -CGUAGAGCGa--CGCG-------UAGU--------------UCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 178822 0.69 0.917898
Target:  5'- gGUAUCUCGUgaacuCGC-UCAggcGGCGCGGGg -3'
miRNA:   3'- -CGUAGAGCGac---GCGuAGU---UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 137928 0.69 0.917898
Target:  5'- cGgAUCUCGUcGCGCAc--GGCGCGAa -3'
miRNA:   3'- -CgUAGAGCGaCGCGUaguUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 226177 0.69 0.917898
Target:  5'- gGUGUUcCGUcaccgGCGCuUCGAGCGCGAGc -3'
miRNA:   3'- -CGUAGaGCGa----CGCGuAGUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 53347 0.69 0.923417
Target:  5'- uCGUCUCGaauggcCUGCGCAacuUCGcgccccuGCGCGAGg -3'
miRNA:   3'- cGUAGAGC------GACGCGU---AGUu------CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 83956 0.69 0.928185
Target:  5'- cGCccgCUCGC-GCGUccacaacGUCAcGCGCGAGg -3'
miRNA:   3'- -CGua-GAGCGaCGCG-------UAGUuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 75112 0.68 0.933756
Target:  5'- uGCAggUCG-UGCaGCGUgAGGCGCGGGa -3'
miRNA:   3'- -CGUagAGCgACG-CGUAgUUCGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.