miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 61455 0.66 0.974561
Target:  5'- uCAUC-CGCacGCGCGUCAAGCagGUGAc -3'
miRNA:   3'- cGUAGaGCGa-CGCGUAGUUCG--CGCUc -5'
13966 3' -54.3 NC_003521.1 + 66423 0.77 0.526155
Target:  5'- aCAUCUguUGCUGCGCGcgcugCGGGUGCGAGg -3'
miRNA:   3'- cGUAGA--GCGACGCGUa----GUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 67564 0.71 0.85808
Target:  5'- uGCAgaaCUCGUcGgGCGUCAGGCGCa-- -3'
miRNA:   3'- -CGUa--GAGCGaCgCGUAGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 67822 0.68 0.947527
Target:  5'- aGCAUC-CGC-GUGCAgcggCAGGaaCGCGAGa -3'
miRNA:   3'- -CGUAGaGCGaCGCGUa---GUUC--GCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 69991 0.73 0.735361
Target:  5'- cGCGUCUCGUcGUGCAgucccagCGAGCGCa-- -3'
miRNA:   3'- -CGUAGAGCGaCGCGUa------GUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 70195 0.67 0.965993
Target:  5'- gGCGUCcggCGUcGCGaagCAGGCGCGAc -3'
miRNA:   3'- -CGUAGa--GCGaCGCguaGUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 70233 0.66 0.981439
Target:  5'- cGCGUCg-GCUucucCGCGggggCGGGCGCGGGu -3'
miRNA:   3'- -CGUAGagCGAc---GCGUa---GUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 70481 0.66 0.974561
Target:  5'- -----cUGCUGCGCGcCAAGCGCuucGAGg -3'
miRNA:   3'- cguagaGCGACGCGUaGUUCGCG---CUC- -5'
13966 3' -54.3 NC_003521.1 + 70811 0.68 0.933756
Target:  5'- cGCGagUgGCUGCuGUGUCGgccggccgAGCGCGAGg -3'
miRNA:   3'- -CGUagAgCGACG-CGUAGU--------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 75112 0.68 0.933756
Target:  5'- uGCAggUCG-UGCaGCGUgAGGCGCGGGa -3'
miRNA:   3'- -CGUagAGCgACG-CGUAgUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 75301 0.66 0.981439
Target:  5'- uGCucCUCGCacgagGUGCAggCGAuGCGCGAGa -3'
miRNA:   3'- -CGuaGAGCGa----CGCGUa-GUU-CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 77396 0.73 0.754493
Target:  5'- -gGUCUCGCaGCGCAagGccguGCGCGAGu -3'
miRNA:   3'- cgUAGAGCGaCGCGUagUu---CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 77444 0.66 0.979323
Target:  5'- uGCGggcCUCGgUGCGCGUCucGGUGCu-- -3'
miRNA:   3'- -CGUa--GAGCgACGCGUAGu-UCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 77772 0.68 0.943167
Target:  5'- uGUAg-UCGCggcagGCGCAcucgUCAAGCaGCGAGg -3'
miRNA:   3'- -CGUagAGCGa----CGCGU----AGUUCG-CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 83956 0.69 0.928185
Target:  5'- cGCccgCUCGC-GCGUccacaacGUCAcGCGCGAGg -3'
miRNA:   3'- -CGua-GAGCGaCGCG-------UAGUuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 84905 0.72 0.781469
Target:  5'- gGCAUCUCGCcggugGCGCGUCAGGaagccuaCGuCGAa -3'
miRNA:   3'- -CGUAGAGCGa----CGCGUAGUUC-------GC-GCUc -5'
13966 3' -54.3 NC_003521.1 + 88382 0.72 0.817688
Target:  5'- aGCGUCUCGCUGa-CGUCGGGCacguaGAGg -3'
miRNA:   3'- -CGUAGAGCGACgcGUAGUUCGcg---CUC- -5'
13966 3' -54.3 NC_003521.1 + 89254 0.68 0.938106
Target:  5'- gGCAUUUCuguaccugaccaaGCUGgGCGaCGAGaCGCGAGa -3'
miRNA:   3'- -CGUAGAG-------------CGACgCGUaGUUC-GCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 90038 0.67 0.962732
Target:  5'- gGCggCUCGCgcccGCcCGUCGucGCGCGAGc -3'
miRNA:   3'- -CGuaGAGCGa---CGcGUAGUu-CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 90319 0.71 0.850373
Target:  5'- cGCGUgUgCGCUcGCGCGacgacgggCGGGCGCGAGc -3'
miRNA:   3'- -CGUAgA-GCGA-CGCGUa-------GUUCGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.