miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 79 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5'
13966 3' -54.3 NC_003521.1 + 27930 0.67 0.969047
Target:  5'- cGCG-CUCGCUcGUGUGUCugucccacguGCGCGGGu -3'
miRNA:   3'- -CGUaGAGCGA-CGCGUAGuu--------CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 29460 0.67 0.969047
Target:  5'- gGUA-CUCGUUGCGCAgCGAGgGCa-- -3'
miRNA:   3'- -CGUaGAGCGACGCGUaGUUCgCGcuc -5'
13966 3' -54.3 NC_003521.1 + 30166 0.67 0.962732
Target:  5'- gGCGUCacgCGUUGuCGCAUgAGcGCGCGGu -3'
miRNA:   3'- -CGUAGa--GCGAC-GCGUAgUU-CGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 30594 0.68 0.943167
Target:  5'- cGCcgaCUCGCUgGCGCAguugcUgGAGCGCGGu -3'
miRNA:   3'- -CGua-GAGCGA-CGCGU-----AgUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 31416 1.1 0.005318
Target:  5'- uGCAUCUCGCUGCGCAUCAAGCGCGAGu -3'
miRNA:   3'- -CGUAGAGCGACGCGUAGUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 32180 0.68 0.943167
Target:  5'- cCAUCgaaagUGCUGCGgGUCGGGCaugGUGGGg -3'
miRNA:   3'- cGUAGa----GCGACGCgUAGUUCG---CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 35149 0.68 0.947527
Target:  5'- uGCGUCUCGCUGgGCuggcccUCGcAGUGCu-- -3'
miRNA:   3'- -CGUAGAGCGACgCGu-----AGU-UCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 35179 0.67 0.959259
Target:  5'- cGCcgCUaccUGCUGCGCuUCGAGgGCGc- -3'
miRNA:   3'- -CGuaGA---GCGACGCGuAGUUCgCGCuc -5'
13966 3' -54.3 NC_003521.1 + 35904 0.67 0.95557
Target:  5'- uGCcgCUCGCaGCGCGUgCGGGaccuGCGAa -3'
miRNA:   3'- -CGuaGAGCGaCGCGUA-GUUCg---CGCUc -5'
13966 3' -54.3 NC_003521.1 + 42139 0.67 0.969047
Target:  5'- gGCAguggagGUUGgGCAcCAGGCGCGAGa -3'
miRNA:   3'- -CGUagag--CGACgCGUaGUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 42942 0.7 0.89352
Target:  5'- aCAUC-CGCUGCcgccuGCAgcccagCGAGCGCGAc -3'
miRNA:   3'- cGUAGaGCGACG-----CGUa-----GUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 43166 0.67 0.969047
Target:  5'- -gAUCUCGCUGgGCuccagAUCGacgGGCGCGc- -3'
miRNA:   3'- cgUAGAGCGACgCG-----UAGU---UCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 53347 0.69 0.923417
Target:  5'- uCGUCUCGaauggcCUGCGCAacuUCGcgccccuGCGCGAGg -3'
miRNA:   3'- cGUAGAGC------GACGCGU---AGUu------CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 54271 0.66 0.979323
Target:  5'- gGCGguuccagCUCGCgcaacaagaUGgGCAacgUCGAGCGCGAu -3'
miRNA:   3'- -CGUa------GAGCG---------ACgCGU---AGUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 55370 0.67 0.972176
Target:  5'- cGCGUCUCGCcggGUGCGgaggugaucgccgagCGGGUGCGc- -3'
miRNA:   3'- -CGUAGAGCGa--CGCGUa--------------GUUCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 55790 0.68 0.943167
Target:  5'- cGCGgcgCUCGCUGCGCGUacc-CGUGGu -3'
miRNA:   3'- -CGUa--GAGCGACGCGUAguucGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 56158 0.71 0.849592
Target:  5'- uGCugCUCGCUGCGCG-CGaacacgcAGCGCGAc -3'
miRNA:   3'- -CGuaGAGCGACGCGUaGU-------UCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 58941 0.74 0.70603
Target:  5'- gGCAUgacCUCGCUGCucaccuGCGUCAuGCGCGGc -3'
miRNA:   3'- -CGUA---GAGCGACG------CGUAGUuCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 61015 0.66 0.97631
Target:  5'- cGCAcgaUgUCGUUGCGCGUCAccccguccagggagGGCaGCGGc -3'
miRNA:   3'- -CGU---AgAGCGACGCGUAGU--------------UCG-CGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.