miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 240628 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5'
13966 3' -54.3 NC_003521.1 + 239798 0.7 0.879983
Target:  5'- cCAUCUgGCUGCGCggCGugauGCGCGc- -3'
miRNA:   3'- cGUAGAgCGACGCGuaGUu---CGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 234133 0.67 0.971347
Target:  5'- aGCAgcgCUCGCggGCGCAggcccugcagcaCGAGCGgGAc -3'
miRNA:   3'- -CGUa--GAGCGa-CGCGUa-----------GUUCGCgCUc -5'
13966 3' -54.3 NC_003521.1 + 232668 0.68 0.943167
Target:  5'- gGCGUUgccgugcCGCagGCGCAgCcAGCGCGAGa -3'
miRNA:   3'- -CGUAGa------GCGa-CGCGUaGuUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 226177 0.69 0.917898
Target:  5'- gGUGUUcCGUcaccgGCGCuUCGAGCGCGAGc -3'
miRNA:   3'- -CGUAGaGCGa----CGCGuAGUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 225873 0.68 0.938577
Target:  5'- aCAUCgugggGCUGCagGCGgcCGAGCGCGAGg -3'
miRNA:   3'- cGUAGag---CGACG--CGUa-GUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 224114 0.73 0.763906
Target:  5'- ---aCUCGCcGCGCAUCAcGCGCGu- -3'
miRNA:   3'- cguaGAGCGaCGCGUAGUuCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 221619 0.71 0.826124
Target:  5'- cCAUgUCGCUGCGCGgcCAGGUGCa-- -3'
miRNA:   3'- cGUAgAGCGACGCGUa-GUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 213901 0.69 0.912147
Target:  5'- aGCGagUCGCgaGCGUGUCugGAGCGCGGu -3'
miRNA:   3'- -CGUagAGCGa-CGCGUAG--UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 213857 0.66 0.974561
Target:  5'- -aGUCUCGCUGCaggGCGUCcauGGCacccaagaGUGAGg -3'
miRNA:   3'- cgUAGAGCGACG---CGUAGu--UCG--------CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 213495 0.66 0.974561
Target:  5'- cGCggCUCGCUGCuCAUCua-CGUGGGc -3'
miRNA:   3'- -CGuaGAGCGACGcGUAGuucGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 201517 0.7 0.879983
Target:  5'- cCAUCUgGCUGCGCggCGugauGCGCGc- -3'
miRNA:   3'- cGUAGAgCGACGCGuaGUu---CGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 200687 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5'
13966 3' -54.3 NC_003521.1 + 198514 0.71 0.825288
Target:  5'- gGCua-UCGCUGCgGCGUCAgccagcuauugauAGCGCGAc -3'
miRNA:   3'- -CGuagAGCGACG-CGUAGU-------------UCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 196032 0.72 0.791426
Target:  5'- cGCcgCUCGUgccaggcaacGCGCGUCcuGCGUGAGg -3'
miRNA:   3'- -CGuaGAGCGa---------CGCGUAGuuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 195363 0.68 0.947102
Target:  5'- gGCGUCU-GCgggacGCGgGUCAggccggguuuuguAGCGCGAGa -3'
miRNA:   3'- -CGUAGAgCGa----CGCgUAGU-------------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 191796 0.67 0.969047
Target:  5'- aGCAUaaaUGCcaGCGCGUCGAGCGCc-- -3'
miRNA:   3'- -CGUAga-GCGa-CGCGUAGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 180546 0.69 0.912147
Target:  5'- cCGUCUcCGCgGCGUAcCGggguGGCGCGAGa -3'
miRNA:   3'- cGUAGA-GCGaCGCGUaGU----UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 178822 0.69 0.917898
Target:  5'- gGUAUCUCGUgaacuCGC-UCAggcGGCGCGGGg -3'
miRNA:   3'- -CGUAGAGCGac---GCGuAGU---UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 166265 0.66 0.981439
Target:  5'- aGCAggCUCGC-GUGUuuuGUCuGAGCGCGAc -3'
miRNA:   3'- -CGUa-GAGCGaCGCG---UAG-UUCGCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.