miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 101663 0.68 0.947527
Target:  5'- cGCGUCUCGaUGaaguugGCGUCGGGCGaGGGg -3'
miRNA:   3'- -CGUAGAGCgACg-----CGUAGUUCGCgCUC- -5'
13966 3' -54.3 NC_003521.1 + 180546 0.69 0.912147
Target:  5'- cCGUCUcCGCgGCGUAcCGggguGGCGCGAGa -3'
miRNA:   3'- cGUAGA-GCGaCGCGUaGU----UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 213901 0.69 0.912147
Target:  5'- aGCGagUCGCgaGCGUGUCugGAGCGCGGu -3'
miRNA:   3'- -CGUagAGCGa-CGCGUAG--UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 110639 0.69 0.915626
Target:  5'- gGCAUCUCGCcggGCGCcggcacgGUCAcggcccggucggccAGCGCGu- -3'
miRNA:   3'- -CGUAGAGCGa--CGCG-------UAGU--------------UCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 178822 0.69 0.917898
Target:  5'- gGUAUCUCGUgaacuCGC-UCAggcGGCGCGGGg -3'
miRNA:   3'- -CGUAGAGCGac---GCGuAGU---UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 32180 0.68 0.943167
Target:  5'- cCAUCgaaagUGCUGCGgGUCGGGCaugGUGGGg -3'
miRNA:   3'- cGUAGa----GCGACGCgUAGUUCG---CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 77772 0.68 0.943167
Target:  5'- uGUAg-UCGCggcagGCGCAcucgUCAAGCaGCGAGg -3'
miRNA:   3'- -CGUagAGCGa----CGCGU----AGUUCG-CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 128452 0.68 0.946243
Target:  5'- aGCG-CUCGCccagGCGgAUCAcguccaugggcagcGGCGUGAGg -3'
miRNA:   3'- -CGUaGAGCGa---CGCgUAGU--------------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 67822 0.68 0.947527
Target:  5'- aGCAUC-CGC-GUGCAgcggCAGGaaCGCGAGa -3'
miRNA:   3'- -CGUAGaGCGaCGCGUa---GUUC--GCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 42942 0.7 0.89352
Target:  5'- aCAUC-CGCUGCcgccuGCAgcccagCGAGCGCGAc -3'
miRNA:   3'- cGUAGaGCGACG-----CGUa-----GUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 117981 0.7 0.88276
Target:  5'- aGCG-CUacgacgaGCUGCGCGacgccauccacgagcUCAAGCGCGAu -3'
miRNA:   3'- -CGUaGAg------CGACGCGU---------------AGUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 239798 0.7 0.879983
Target:  5'- cCAUCUgGCUGCGCggCGugauGCGCGc- -3'
miRNA:   3'- cGUAGAgCGACGCGuaGUu---CGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 159828 0.74 0.676151
Target:  5'- gGCcgUgaggCGCUGCGCGg-AGGCGCGAGc -3'
miRNA:   3'- -CGuaGa---GCGACGCGUagUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 69991 0.73 0.735361
Target:  5'- cGCGUCUCGUcGUGCAgucccagCGAGCGCa-- -3'
miRNA:   3'- -CGUAGAGCGaCGCGUa------GUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 123178 0.73 0.754493
Target:  5'- cCGUCUCGCgGCGCAgucgCAGGCG-GAa -3'
miRNA:   3'- cGUAGAGCGaCGCGUa---GUUCGCgCUc -5'
13966 3' -54.3 NC_003521.1 + 224114 0.73 0.763906
Target:  5'- ---aCUCGCcGCGCAUCAcGCGCGu- -3'
miRNA:   3'- cguaGAGCGaCGCGUAGUuCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 118788 0.72 0.791426
Target:  5'- uGCAUCUCGCUGCGgAggUAGGagGUGGGu -3'
miRNA:   3'- -CGUAGAGCGACGCgUa-GUUCg-CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 88382 0.72 0.817688
Target:  5'- aGCGUCUCGCUGa-CGUCGGGCacguaGAGg -3'
miRNA:   3'- -CGUAGAGCGACgcGUAGUUCGcg---CUC- -5'
13966 3' -54.3 NC_003521.1 + 145299 0.71 0.842474
Target:  5'- gGCGUCUCGCcGgGCAUCcaguucggccugAAGCaCGAGg -3'
miRNA:   3'- -CGUAGAGCGaCgCGUAG------------UUCGcGCUC- -5'
13966 3' -54.3 NC_003521.1 + 56158 0.71 0.849592
Target:  5'- uGCugCUCGCUGCGCG-CGaacacgcAGCGCGAc -3'
miRNA:   3'- -CGuaGAGCGACGCGUaGU-------UCGCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.