miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 31416 1.1 0.005318
Target:  5'- uGCAUCUCGCUGCGCAUCAAGCGCGAGu -3'
miRNA:   3'- -CGUAGAGCGACGCGUAGUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 201517 0.7 0.879983
Target:  5'- cCAUCUgGCUGCGCggCGugauGCGCGc- -3'
miRNA:   3'- cGUAGAgCGACGCGuaGUu---CGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 226177 0.69 0.917898
Target:  5'- gGUGUUcCGUcaccgGCGCuUCGAGCGCGAGc -3'
miRNA:   3'- -CGUAGaGCGa----CGCGuAGUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 145303 0.66 0.982821
Target:  5'- uCAUCgugcCGCUcggccacgcgaccaGCGCGUCGGcgaugucggcGCGCGAGg -3'
miRNA:   3'- cGUAGa---GCGA--------------CGCGUAGUU----------CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 58941 0.74 0.70603
Target:  5'- gGCAUgacCUCGCUGCucaccuGCGUCAuGCGCGGc -3'
miRNA:   3'- -CGUA---GAGCGACG------CGUAGUuCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 77396 0.73 0.754493
Target:  5'- -gGUCUCGCaGCGCAagGccguGCGCGAGu -3'
miRNA:   3'- cgUAGAGCGaCGCGUagUu---CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 84905 0.72 0.781469
Target:  5'- gGCAUCUCGCcggugGCGCGUCAGGaagccuaCGuCGAa -3'
miRNA:   3'- -CGUAGAGCGa----CGCGUAGUUC-------GC-GCUc -5'
13966 3' -54.3 NC_003521.1 + 93177 0.72 0.782381
Target:  5'- gGCGcCgUCGCUGcCGUAUCGAGCGCacGGGg -3'
miRNA:   3'- -CGUaG-AGCGAC-GCGUAGUUCGCG--CUC- -5'
13966 3' -54.3 NC_003521.1 + 156881 0.72 0.809087
Target:  5'- gGCGUCgCGCa--GCAcCAGGCGCGAGa -3'
miRNA:   3'- -CGUAGaGCGacgCGUaGUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 152260 0.7 0.865587
Target:  5'- uGCAcuUCUCGCUGUGCAccauccucUCGuGCGUaGAGa -3'
miRNA:   3'- -CGU--AGAGCGACGCGU--------AGUuCGCG-CUC- -5'
13966 3' -54.3 NC_003521.1 + 221619 0.71 0.826124
Target:  5'- cCAUgUCGCUGCGCGgcCAGGUGCa-- -3'
miRNA:   3'- cGUAgAGCGACGCGUa-GUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 122474 0.72 0.800331
Target:  5'- cGCG-CUCGCagGCaGCAUgGAGuCGCGAGg -3'
miRNA:   3'- -CGUaGAGCGa-CG-CGUAgUUC-GCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 66423 0.77 0.526155
Target:  5'- aCAUCUguUGCUGCGCGcgcugCGGGUGCGAGg -3'
miRNA:   3'- cGUAGA--GCGACGCGUa----GUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 90319 0.71 0.850373
Target:  5'- cGCGUgUgCGCUcGCGCGacgacgggCGGGCGCGAGc -3'
miRNA:   3'- -CGUAgA-GCGA-CGCGUa-------GUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 153982 0.77 0.544733
Target:  5'- gGCAUCgugcCGCUgguggacGCGCGUCccaagGAGCGCGAGg -3'
miRNA:   3'- -CGUAGa---GCGA-------CGCGUAG-----UUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 196032 0.72 0.791426
Target:  5'- cGCcgCUCGUgccaggcaacGCGCGUCcuGCGUGAGg -3'
miRNA:   3'- -CGuaGAGCGa---------CGCGUAGuuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 67564 0.71 0.85808
Target:  5'- uGCAgaaCUCGUcGgGCGUCAGGCGCa-- -3'
miRNA:   3'- -CGUa--GAGCGaCgCGUAGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 128767 0.69 0.912147
Target:  5'- aGCGaCUCGCUGuCGCAggCcGGCGCGc- -3'
miRNA:   3'- -CGUaGAGCGAC-GCGUa-GuUCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 143746 0.76 0.575472
Target:  5'- cCGUCUCGCUGUGC-UUgcGCGCGAu -3'
miRNA:   3'- cGUAGAGCGACGCGuAGuuCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 121486 0.72 0.773205
Target:  5'- aCAUCUUccuggaGCUGCGCGcCcuGCGCGAGa -3'
miRNA:   3'- cGUAGAG------CGACGCGUaGuuCGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.