miRNA display CGI


Results 41 - 60 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 5' -53.4 NC_003521.1 + 124464 0.7 0.896451
Target:  5'- gGCACGCGUUCGccgccGCGCuCGCGg- -3'
miRNA:   3'- aCGUGUGCAAGUucaa-CGCG-GCGCac -5'
13966 5' -53.4 NC_003521.1 + 125611 0.67 0.978372
Target:  5'- cGCGgACGaaCAGcgUGgGCCGCGUGu -3'
miRNA:   3'- aCGUgUGCaaGUUcaACgCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 126386 0.68 0.961147
Target:  5'- gUGCGCACGgccgUCAGGgcgaaGC-CCGgGUGg -3'
miRNA:   3'- -ACGUGUGCa---AGUUCaa---CGcGGCgCAC- -5'
13966 5' -53.4 NC_003521.1 + 127663 0.66 0.989167
Target:  5'- uUGCGCAgGaUCAGGaagGCGuCCGUGUu -3'
miRNA:   3'- -ACGUGUgCaAGUUCaa-CGC-GGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 128043 0.69 0.945419
Target:  5'- cGCACGCGguagAAGUggccgacGCGCCGCGc- -3'
miRNA:   3'- aCGUGUGCaag-UUCAa------CGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 131851 0.66 0.987292
Target:  5'- gUGgGCugGUUCAAGgcggccacggccaucGUGCCGCGc- -3'
miRNA:   3'- -ACgUGugCAAGUUCaa-------------CGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 132538 0.71 0.889849
Target:  5'- gGCACACGgUCAAGagguugGCGuuGCGg- -3'
miRNA:   3'- aCGUGUGCaAGUUCaa----CGCggCGCac -5'
13966 5' -53.4 NC_003521.1 + 137463 0.71 0.875977
Target:  5'- cGCGCACcgaCGAGUggaaggGCGCCgGCGUGu -3'
miRNA:   3'- aCGUGUGcaaGUUCAa-----CGCGG-CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 143288 0.66 0.990457
Target:  5'- cGCGCAUGUUCGA---GCGCCuCGa- -3'
miRNA:   3'- aCGUGUGCAAGUUcaaCGCGGcGCac -5'
13966 5' -53.4 NC_003521.1 + 144439 0.75 0.689095
Target:  5'- aGCGCGCGg-CAGGcgGCGCCgGCGUGc -3'
miRNA:   3'- aCGUGUGCaaGUUCaaCGCGG-CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 145485 0.68 0.960797
Target:  5'- cGCACGCug-CAGGUggagcccUGCGCgCGCGUc -3'
miRNA:   3'- aCGUGUGcaaGUUCA-------ACGCG-GCGCAc -5'
13966 5' -53.4 NC_003521.1 + 148805 0.71 0.861246
Target:  5'- cUGCGgACGUUCAucgUGCGCgGCGa- -3'
miRNA:   3'- -ACGUgUGCAAGUucaACGCGgCGCac -5'
13966 5' -53.4 NC_003521.1 + 149200 0.68 0.953733
Target:  5'- aGCACACGcgCcAGcacgGCGCUGCGg- -3'
miRNA:   3'- aCGUGUGCaaGuUCaa--CGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 150283 0.7 0.926004
Target:  5'- cGCGCACGUgcacgugaAGGUgGCGUCGuCGUGc -3'
miRNA:   3'- aCGUGUGCAag------UUCAaCGCGGC-GCAC- -5'
13966 5' -53.4 NC_003521.1 + 150376 0.72 0.853572
Target:  5'- aGCGCACGUagGGGUUGaaGUCGCGUc -3'
miRNA:   3'- aCGUGUGCAagUUCAACg-CGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 152895 0.67 0.970658
Target:  5'- -uCGCACGUUCcgccUGCGCCGCcUGg -3'
miRNA:   3'- acGUGUGCAAGuucaACGCGGCGcAC- -5'
13966 5' -53.4 NC_003521.1 + 153394 0.66 0.986183
Target:  5'- aGCGCAggaucuccuCGUgCAGG-UGCGCCaccgGCGUGg -3'
miRNA:   3'- aCGUGU---------GCAaGUUCaACGCGG----CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 153790 0.7 0.908971
Target:  5'- gUGCGCGUGUUCAAGaaggUGCGCaGCGa- -3'
miRNA:   3'- -ACGUGUGCAAGUUCa---ACGCGgCGCac -5'
13966 5' -53.4 NC_003521.1 + 153896 0.76 0.618172
Target:  5'- aGCGCGCGguaGGGgaacaGCGCCGCGUGc -3'
miRNA:   3'- aCGUGUGCaagUUCaa---CGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 166386 0.72 0.829388
Target:  5'- gUGCGCACGUacuugagcugcgUCAAGUcGUaGCCGCGg- -3'
miRNA:   3'- -ACGUGUGCA------------AGUUCAaCG-CGGCGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.