miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 5' -53.4 NC_003521.1 + 74151 0.68 0.960797
Target:  5'- cGCGcCACGgggccCAGGUgccgcuggccgacUGCGCCGCGg- -3'
miRNA:   3'- aCGU-GUGCaa---GUUCA-------------ACGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 75601 0.68 0.967695
Target:  5'- cGCuuCGCGUUCGGGcgGCGCCaCGg- -3'
miRNA:   3'- aCGu-GUGCAAGUUCaaCGCGGcGCac -5'
13966 5' -53.4 NC_003521.1 + 76155 0.69 0.936181
Target:  5'- cGCACACGgcgCAGGUacagGuCGUCGCGg- -3'
miRNA:   3'- aCGUGUGCaa-GUUCAa---C-GCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 77130 0.67 0.97342
Target:  5'- cGCGCACGgcc---UUGCGCUGCGa- -3'
miRNA:   3'- aCGUGUGCaaguucAACGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 77370 0.68 0.964527
Target:  5'- aGUGCAUGcgCGAGUgccgcgaccccaUGCGCCGCa-- -3'
miRNA:   3'- aCGUGUGCaaGUUCA------------ACGCGGCGcac -5'
13966 5' -53.4 NC_003521.1 + 81219 0.67 0.980575
Target:  5'- uUGUugAUGU---AGUUGCGCaGCGUGu -3'
miRNA:   3'- -ACGugUGCAaguUCAACGCGgCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 85936 0.66 0.986183
Target:  5'- --aGCACGUUCuc---GCGCCGCGa- -3'
miRNA:   3'- acgUGUGCAAGuucaaCGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 88523 0.69 0.93121
Target:  5'- aGCACuCGgUCAAGcugGCGCCGCa-- -3'
miRNA:   3'- aCGUGuGCaAGUUCaa-CGCGGCGcac -5'
13966 5' -53.4 NC_003521.1 + 90887 0.68 0.964527
Target:  5'- aUGCGCACGUUgAAc-UGCGCaUGCGUc -3'
miRNA:   3'- -ACGUGUGCAAgUUcaACGCG-GCGCAc -5'
13966 5' -53.4 NC_003521.1 + 101804 0.66 0.986183
Target:  5'- cGCGCACGaagccCAGGggGCGgUCGCGg- -3'
miRNA:   3'- aCGUGUGCaa---GUUCaaCGC-GGCGCac -5'
13966 5' -53.4 NC_003521.1 + 102721 0.68 0.961147
Target:  5'- aGCACACGgucuUCGAGaucUGCCGCGg- -3'
miRNA:   3'- aCGUGUGCa---AGUUCaacGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 103717 0.67 0.970658
Target:  5'- gGCACaggaaaaccAgGUUCAGGUgccgcagcacCGCCGCGUGg -3'
miRNA:   3'- aCGUG---------UgCAAGUUCAac--------GCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 109956 0.68 0.967695
Target:  5'- gGCACACGgUCAugaAGUccUGCGCCuGCa-- -3'
miRNA:   3'- aCGUGUGCaAGU---UCA--ACGCGG-CGcac -5'
13966 5' -53.4 NC_003521.1 + 113165 0.67 0.975989
Target:  5'- cUGCuCGCGgcCAAGaUGgGCCGCGa- -3'
miRNA:   3'- -ACGuGUGCaaGUUCaACgCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 113655 0.67 0.971786
Target:  5'- aGUACAUGUUCGcgcagagcuccaagcAGUacggcgaucUGCGCCGCcUGg -3'
miRNA:   3'- aCGUGUGCAAGU---------------UCA---------ACGCGGCGcAC- -5'
13966 5' -53.4 NC_003521.1 + 114836 0.67 0.980575
Target:  5'- cGCGCAcCGUgcUCAuGcUGCGCCuuaGCGUGc -3'
miRNA:   3'- aCGUGU-GCA--AGUuCaACGCGG---CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 119524 0.7 0.920561
Target:  5'- gGUGCGgGUaCGGGUUGUGCCGCa-- -3'
miRNA:   3'- aCGUGUgCAaGUUCAACGCGGCGcac -5'
13966 5' -53.4 NC_003521.1 + 122986 0.67 0.980575
Target:  5'- cGCuCACGUaUCAGGUgaagucgGCGCUGCa-- -3'
miRNA:   3'- aCGuGUGCA-AGUUCAa------CGCGGCGcac -5'
13966 5' -53.4 NC_003521.1 + 123574 0.67 0.980575
Target:  5'- gGCAguCGUgCA----GCGCCGCGUGa -3'
miRNA:   3'- aCGUguGCAaGUucaaCGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 124000 0.7 0.902826
Target:  5'- gUGCAgCugGaUCAGGUgguagGUGCCGCGg- -3'
miRNA:   3'- -ACGU-GugCaAGUUCAa----CGCGGCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.