Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13966 | 5' | -53.4 | NC_003521.1 | + | 54904 | 0.7 | 0.926004 |
Target: 5'- cUGCGCAcCGUuugCAGGaucaGCGCCgGCGUGg -3' miRNA: 3'- -ACGUGU-GCAa--GUUCaa--CGCGG-CGCAC- -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 180638 | 0.69 | 0.93121 |
Target: 5'- gGCGCGCGUUCuca---CGCCGCGg- -3' miRNA: 3'- aCGUGUGCAAGuucaacGCGGCGCac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 221987 | 0.69 | 0.93121 |
Target: 5'- cGCACuCGUUguAGggcaUGUGCgGCGUGg -3' miRNA: 3'- aCGUGuGCAAguUCa---ACGCGgCGCAC- -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 88523 | 0.69 | 0.93121 |
Target: 5'- aGCACuCGgUCAAGcugGCGCCGCa-- -3' miRNA: 3'- aCGUGuGCaAGUUCaa-CGCGGCGcac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 76155 | 0.69 | 0.936181 |
Target: 5'- cGCACACGgcgCAGGUacagGuCGUCGCGg- -3' miRNA: 3'- aCGUGUGCaa-GUUCAa---C-GCGGCGCac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 57574 | 0.69 | 0.936181 |
Target: 5'- cGCGCGCcUUCGAGg-GCGCCgGCGg- -3' miRNA: 3'- aCGUGUGcAAGUUCaaCGCGG-CGCac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 128043 | 0.69 | 0.945419 |
Target: 5'- cGCACGCGguagAAGUggccgacGCGCCGCGc- -3' miRNA: 3'- aCGUGUGCaag-UUCAa------CGCGGCGCac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 149200 | 0.68 | 0.953733 |
Target: 5'- aGCACACGcgCcAGcacgGCGCUGCGg- -3' miRNA: 3'- aCGUGUGCaaGuUCaa--CGCGGCGCac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 172195 | 0.68 | 0.956429 |
Target: 5'- gGCACAUGUUCAGG--GCGCCcaggaaguccacggGgGUGg -3' miRNA: 3'- aCGUGUGCAAGUUCaaCGCGG--------------CgCAC- -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 54413 | 0.68 | 0.957551 |
Target: 5'- aUGCGCAUGUUC---UUGaCGCCGUGg- -3' miRNA: 3'- -ACGUGUGCAAGuucAAC-GCGGCGCac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 74151 | 0.68 | 0.960797 |
Target: 5'- cGCGcCACGgggccCAGGUgccgcuggccgacUGCGCCGCGg- -3' miRNA: 3'- aCGU-GUGCaa---GUUCA-------------ACGCGGCGCac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 145485 | 0.68 | 0.960797 |
Target: 5'- cGCACGCug-CAGGUggagcccUGCGCgCGCGUc -3' miRNA: 3'- aCGUGUGcaaGUUCA-------ACGCG-GCGCAc -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 126386 | 0.68 | 0.961147 |
Target: 5'- gUGCGCACGgccgUCAGGgcgaaGC-CCGgGUGg -3' miRNA: 3'- -ACGUGUGCa---AGUUCaa---CGcGGCgCAC- -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 56447 | 0.68 | 0.961147 |
Target: 5'- gGCugAUGgUCAAccuGUcGCGCUGCGUGu -3' miRNA: 3'- aCGugUGCaAGUU---CAaCGCGGCGCAC- -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 102721 | 0.68 | 0.961147 |
Target: 5'- aGCACACGgucuUCGAGaucUGCCGCGg- -3' miRNA: 3'- aCGUGUGCa---AGUUCaacGCGGCGCac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 90887 | 0.68 | 0.964527 |
Target: 5'- aUGCGCACGUUgAAc-UGCGCaUGCGUc -3' miRNA: 3'- -ACGUGUGCAAgUUcaACGCG-GCGCAc -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 77370 | 0.68 | 0.964527 |
Target: 5'- aGUGCAUGcgCGAGUgccgcgaccccaUGCGCCGCa-- -3' miRNA: 3'- aCGUGUGCaaGUUCA------------ACGCGGCGcac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 75601 | 0.68 | 0.967695 |
Target: 5'- cGCuuCGCGUUCGGGcgGCGCCaCGg- -3' miRNA: 3'- aCGu-GUGCAAGUUCaaCGCGGcGCac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 109956 | 0.68 | 0.967695 |
Target: 5'- gGCACACGgUCAugaAGUccUGCGCCuGCa-- -3' miRNA: 3'- aCGUGUGCaAGU---UCA--ACGCGG-CGcac -5' |
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13966 | 5' | -53.4 | NC_003521.1 | + | 103717 | 0.67 | 0.970658 |
Target: 5'- gGCACaggaaaaccAgGUUCAGGUgccgcagcacCGCCGCGUGg -3' miRNA: 3'- aCGUG---------UgCAAGUUCAac--------GCGGCGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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