miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 5' -53.4 NC_003521.1 + 223656 0.67 0.980575
Target:  5'- cGcCACACGgcccgcgUCGGG--GCGCCGCGa- -3'
miRNA:   3'- aC-GUGUGCa------AGUUCaaCGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 63920 0.67 0.980575
Target:  5'- aGCuCugGUUCAcgggcacggGGUUGCGCgUGCGg- -3'
miRNA:   3'- aCGuGugCAAGU---------UCAACGCG-GCGCac -5'
13966 5' -53.4 NC_003521.1 + 7715 0.67 0.980148
Target:  5'- cGCACgucccGCGUggugcugUGCGCCGCGUc -3'
miRNA:   3'- aCGUG-----UGCAaguuca-ACGCGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 38987 0.67 0.978372
Target:  5'- aGCACGCGcUUAAGUaGCGCCaccaggacgcccGCGa- -3'
miRNA:   3'- aCGUGUGCaAGUUCAaCGCGG------------CGCac -5'
13966 5' -53.4 NC_003521.1 + 125611 0.67 0.978372
Target:  5'- cGCGgACGaaCAGcgUGgGCCGCGUGu -3'
miRNA:   3'- aCGUgUGCaaGUUcaACgCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 113165 0.67 0.975989
Target:  5'- cUGCuCGCGgcCAAGaUGgGCCGCGa- -3'
miRNA:   3'- -ACGuGUGCaaGUUCaACgCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 72484 0.67 0.97342
Target:  5'- cGUGCACGg-CGAG-UGCGCCuCGUGc -3'
miRNA:   3'- aCGUGUGCaaGUUCaACGCGGcGCAC- -5'
13966 5' -53.4 NC_003521.1 + 77130 0.67 0.97342
Target:  5'- cGCGCACGgcc---UUGCGCUGCGa- -3'
miRNA:   3'- aCGUGUGCaaguucAACGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 113655 0.67 0.971786
Target:  5'- aGUACAUGUUCGcgcagagcuccaagcAGUacggcgaucUGCGCCGCcUGg -3'
miRNA:   3'- aCGUGUGCAAGU---------------UCA---------ACGCGGCGcAC- -5'
13966 5' -53.4 NC_003521.1 + 152895 0.67 0.970658
Target:  5'- -uCGCACGUUCcgccUGCGCCGCcUGg -3'
miRNA:   3'- acGUGUGCAAGuucaACGCGGCGcAC- -5'
13966 5' -53.4 NC_003521.1 + 172351 0.67 0.970658
Target:  5'- gGCACACGUcgggCGGGUgggucacggGCaCCGUGUGu -3'
miRNA:   3'- aCGUGUGCAa---GUUCAa--------CGcGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 103717 0.67 0.970658
Target:  5'- gGCACaggaaaaccAgGUUCAGGUgccgcagcacCGCCGCGUGg -3'
miRNA:   3'- aCGUG---------UgCAAGUUCAac--------GCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 75601 0.68 0.967695
Target:  5'- cGCuuCGCGUUCGGGcgGCGCCaCGg- -3'
miRNA:   3'- aCGu-GUGCAAGUUCaaCGCGGcGCac -5'
13966 5' -53.4 NC_003521.1 + 109956 0.68 0.967695
Target:  5'- gGCACACGgUCAugaAGUccUGCGCCuGCa-- -3'
miRNA:   3'- aCGUGUGCaAGU---UCA--ACGCGG-CGcac -5'
13966 5' -53.4 NC_003521.1 + 77370 0.68 0.964527
Target:  5'- aGUGCAUGcgCGAGUgccgcgaccccaUGCGCCGCa-- -3'
miRNA:   3'- aCGUGUGCaaGUUCA------------ACGCGGCGcac -5'
13966 5' -53.4 NC_003521.1 + 90887 0.68 0.964527
Target:  5'- aUGCGCACGUUgAAc-UGCGCaUGCGUc -3'
miRNA:   3'- -ACGUGUGCAAgUUcaACGCG-GCGCAc -5'
13966 5' -53.4 NC_003521.1 + 56447 0.68 0.961147
Target:  5'- gGCugAUGgUCAAccuGUcGCGCUGCGUGu -3'
miRNA:   3'- aCGugUGCaAGUU---CAaCGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 126386 0.68 0.961147
Target:  5'- gUGCGCACGgccgUCAGGgcgaaGC-CCGgGUGg -3'
miRNA:   3'- -ACGUGUGCa---AGUUCaa---CGcGGCgCAC- -5'
13966 5' -53.4 NC_003521.1 + 102721 0.68 0.961147
Target:  5'- aGCACACGgucuUCGAGaucUGCCGCGg- -3'
miRNA:   3'- aCGUGUGCa---AGUUCaacGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 145485 0.68 0.960797
Target:  5'- cGCACGCug-CAGGUggagcccUGCGCgCGCGUc -3'
miRNA:   3'- aCGUGUGcaaGUUCA-------ACGCG-GCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.