miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 5' -53.4 NC_003521.1 + 196604 0.66 0.990457
Target:  5'- cUGCACGCGcuggaaaUCGAGcUGCaGCCGcCGUc -3'
miRNA:   3'- -ACGUGUGCa------AGUUCaACG-CGGC-GCAc -5'
13966 5' -53.4 NC_003521.1 + 65289 0.66 0.990457
Target:  5'- cUGCACGCGggcCAGGaUGCGCgugcuaggggCGCGg- -3'
miRNA:   3'- -ACGUGUGCaa-GUUCaACGCG----------GCGCac -5'
13966 5' -53.4 NC_003521.1 + 143288 0.66 0.990457
Target:  5'- cGCGCAUGUUCGA---GCGCCuCGa- -3'
miRNA:   3'- aCGUGUGCAAGUUcaaCGCGGcGCac -5'
13966 5' -53.4 NC_003521.1 + 29597 0.66 0.990084
Target:  5'- aGCGCACGUagucggugCAaaugaaagcguccuGGUUGCGCacguaGCGUa -3'
miRNA:   3'- aCGUGUGCAa-------GU--------------UCAACGCGg----CGCAc -5'
13966 5' -53.4 NC_003521.1 + 26270 0.66 0.989167
Target:  5'- cUGCACAUGggUCugcg-GCGCUGCGg- -3'
miRNA:   3'- -ACGUGUGCa-AGuucaaCGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 127663 0.66 0.989167
Target:  5'- uUGCGCAgGaUCAGGaagGCGuCCGUGUu -3'
miRNA:   3'- -ACGUGUgCaAGUUCaa-CGC-GGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 204649 0.66 0.989167
Target:  5'- gGC-CGCGgagaCGAGUUGCGCuCGCu-- -3'
miRNA:   3'- aCGuGUGCaa--GUUCAACGCG-GCGcac -5'
13966 5' -53.4 NC_003521.1 + 60071 0.66 0.987745
Target:  5'- aGCACGCGgUCca---GCGCCGUGUc -3'
miRNA:   3'- aCGUGUGCaAGuucaaCGCGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 66937 0.66 0.987745
Target:  5'- gGCaACGuggUGUUCAAGUaccugGCGCUGCGg- -3'
miRNA:   3'- aCG-UGU---GCAAGUUCAa----CGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 131851 0.66 0.987292
Target:  5'- gUGgGCugGUUCAAGgcggccacggccaucGUGCCGCGc- -3'
miRNA:   3'- -ACgUGugCAAGUUCaa-------------CGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 26056 0.66 0.986183
Target:  5'- aGCugAUGgu-GGGcUGCaGCCGCGUGg -3'
miRNA:   3'- aCGugUGCaagUUCaACG-CGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 85936 0.66 0.986183
Target:  5'- --aGCACGUUCuc---GCGCCGCGa- -3'
miRNA:   3'- acgUGUGCAAGuucaaCGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 153394 0.66 0.986183
Target:  5'- aGCGCAggaucuccuCGUgCAGG-UGCGCCaccgGCGUGg -3'
miRNA:   3'- aCGUGU---------GCAaGUUCaACGCGG----CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 101804 0.66 0.986183
Target:  5'- cGCGCACGaagccCAGGggGCGgUCGCGg- -3'
miRNA:   3'- aCGUGUGCaa---GUUCaaCGC-GGCGCac -5'
13966 5' -53.4 NC_003521.1 + 114836 0.67 0.980575
Target:  5'- cGCGCAcCGUgcUCAuGcUGCGCCuuaGCGUGc -3'
miRNA:   3'- aCGUGU-GCA--AGUuCaACGCGG---CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 123574 0.67 0.980575
Target:  5'- gGCAguCGUgCA----GCGCCGCGUGa -3'
miRNA:   3'- aCGUguGCAaGUucaaCGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 223656 0.67 0.980575
Target:  5'- cGcCACACGgcccgcgUCGGG--GCGCCGCGa- -3'
miRNA:   3'- aC-GUGUGCa------AGUUCaaCGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 63920 0.67 0.980575
Target:  5'- aGCuCugGUUCAcgggcacggGGUUGCGCgUGCGg- -3'
miRNA:   3'- aCGuGugCAAGU---------UCAACGCG-GCGCac -5'
13966 5' -53.4 NC_003521.1 + 229810 0.67 0.980575
Target:  5'- gGCugACGUUCA--UUGCGgCCG-GUGc -3'
miRNA:   3'- aCGugUGCAAGUucAACGC-GGCgCAC- -5'
13966 5' -53.4 NC_003521.1 + 168584 0.67 0.980575
Target:  5'- aGCACAUcUUCGAGgagguggcGCGCCucauGCGUGu -3'
miRNA:   3'- aCGUGUGcAAGUUCaa------CGCGG----CGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.