miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 5' -53.4 NC_003521.1 + 74151 0.68 0.960797
Target:  5'- cGCGcCACGgggccCAGGUgccgcuggccgacUGCGCCGCGg- -3'
miRNA:   3'- aCGU-GUGCaa---GUUCA-------------ACGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 221987 0.69 0.93121
Target:  5'- cGCACuCGUUguAGggcaUGUGCgGCGUGg -3'
miRNA:   3'- aCGUGuGCAAguUCa---ACGCGgCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 180638 0.69 0.93121
Target:  5'- gGCGCGCGUUCuca---CGCCGCGg- -3'
miRNA:   3'- aCGUGUGCAAGuucaacGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 76155 0.69 0.936181
Target:  5'- cGCACACGgcgCAGGUacagGuCGUCGCGg- -3'
miRNA:   3'- aCGUGUGCaa-GUUCAa---C-GCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 57574 0.69 0.936181
Target:  5'- cGCGCGCcUUCGAGg-GCGCCgGCGg- -3'
miRNA:   3'- aCGUGUGcAAGUUCaaCGCGG-CGCac -5'
13966 5' -53.4 NC_003521.1 + 128043 0.69 0.945419
Target:  5'- cGCACGCGguagAAGUggccgacGCGCCGCGc- -3'
miRNA:   3'- aCGUGUGCaag-UUCAa------CGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 172195 0.68 0.956429
Target:  5'- gGCACAUGUUCAGG--GCGCCcaggaaguccacggGgGUGg -3'
miRNA:   3'- aCGUGUGCAAGUUCaaCGCGG--------------CgCAC- -5'
13966 5' -53.4 NC_003521.1 + 54413 0.68 0.957551
Target:  5'- aUGCGCAUGUUC---UUGaCGCCGUGg- -3'
miRNA:   3'- -ACGUGUGCAAGuucAAC-GCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 145485 0.68 0.960797
Target:  5'- cGCACGCug-CAGGUggagcccUGCGCgCGCGUc -3'
miRNA:   3'- aCGUGUGcaaGUUCA-------ACGCG-GCGCAc -5'
13966 5' -53.4 NC_003521.1 + 54904 0.7 0.926004
Target:  5'- cUGCGCAcCGUuugCAGGaucaGCGCCgGCGUGg -3'
miRNA:   3'- -ACGUGU-GCAa--GUUCaa--CGCGG-CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 119524 0.7 0.920561
Target:  5'- gGUGCGgGUaCGGGUUGUGCCGCa-- -3'
miRNA:   3'- aCGUGUgCAaGUUCAACGCGGCGcac -5'
13966 5' -53.4 NC_003521.1 + 222256 0.7 0.902826
Target:  5'- aGCGCGCucUCcAGcUGCGCgCGCGUGa -3'
miRNA:   3'- aCGUGUGcaAGuUCaACGCG-GCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 153896 0.76 0.618172
Target:  5'- aGCGCGCGguaGGGgaacaGCGCCGCGUGc -3'
miRNA:   3'- aCGUGUGCaagUUCaa---CGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 71995 0.76 0.628336
Target:  5'- cGCGCAgcuCGcuggggcccagcUUCAGGaUGCGCCGCGUGg -3'
miRNA:   3'- aCGUGU---GC------------AAGUUCaACGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 166386 0.72 0.829388
Target:  5'- gUGCGCACGUacuugagcugcgUCAAGUcGUaGCCGCGg- -3'
miRNA:   3'- -ACGUGUGCA------------AGUUCAaCG-CGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 56095 0.72 0.853572
Target:  5'- aGCACGCGcagaUCgAAGUaGCGUCGCGUa -3'
miRNA:   3'- aCGUGUGCa---AG-UUCAaCGCGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 148805 0.71 0.861246
Target:  5'- cUGCGgACGUUCAucgUGCGCgGCGa- -3'
miRNA:   3'- -ACGUgUGCAAGUucaACGCGgCGCac -5'
13966 5' -53.4 NC_003521.1 + 137463 0.71 0.875977
Target:  5'- cGCGCACcgaCGAGUggaaggGCGCCgGCGUGu -3'
miRNA:   3'- aCGUGUGcaaGUUCAa-----CGCGG-CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 124464 0.7 0.896451
Target:  5'- gGCACGCGUUCGccgccGCGCuCGCGg- -3'
miRNA:   3'- aCGUGUGCAAGUucaa-CGCG-GCGCac -5'
13966 5' -53.4 NC_003521.1 + 124000 0.7 0.902826
Target:  5'- gUGCAgCugGaUCAGGUgguagGUGCCGCGg- -3'
miRNA:   3'- -ACGU-GugCaAGUUCAa----CGCGGCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.