miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 5' -53.4 NC_003521.1 + 31380 1.08 0.008736
Target:  5'- cUGCACACGUUCAAGUUGCGCCGCGUGu -3'
miRNA:   3'- -ACGUGUGCAAGUUCAACGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 125611 0.67 0.978372
Target:  5'- cGCGgACGaaCAGcgUGgGCCGCGUGu -3'
miRNA:   3'- aCGUgUGCaaGUUcaACgCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 168584 0.67 0.980575
Target:  5'- aGCACAUcUUCGAGgagguggcGCGCCucauGCGUGu -3'
miRNA:   3'- aCGUGUGcAAGUUCaa------CGCGG----CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 196604 0.66 0.990457
Target:  5'- cUGCACGCGcuggaaaUCGAGcUGCaGCCGcCGUc -3'
miRNA:   3'- -ACGUGUGCa------AGUUCaACG-CGGC-GCAc -5'
13966 5' -53.4 NC_003521.1 + 40773 0.73 0.803613
Target:  5'- cUGCugGaggaGUUCGAGaUGCGCUGCGg- -3'
miRNA:   3'- -ACGugUg---CAAGUUCaACGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 150376 0.72 0.853572
Target:  5'- aGCGCACGUagGGGUUGaaGUCGCGUc -3'
miRNA:   3'- aCGUGUGCAagUUCAACg-CGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 153790 0.7 0.908971
Target:  5'- gUGCGCGUGUUCAAGaaggUGCGCaGCGa- -3'
miRNA:   3'- -ACGUGUGCAAGUUCa---ACGCGgCGCac -5'
13966 5' -53.4 NC_003521.1 + 150283 0.7 0.926004
Target:  5'- cGCGCACGUgcacgugaAGGUgGCGUCGuCGUGc -3'
miRNA:   3'- aCGUGUGCAag------UUCAaCGCGGC-GCAC- -5'
13966 5' -53.4 NC_003521.1 + 102721 0.68 0.961147
Target:  5'- aGCACACGgucuUCGAGaucUGCCGCGg- -3'
miRNA:   3'- aCGUGUGCa---AGUUCaacGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 38987 0.67 0.978372
Target:  5'- aGCACGCGcUUAAGUaGCGCCaccaggacgcccGCGa- -3'
miRNA:   3'- aCGUGUGCaAGUUCAaCGCGG------------CGCac -5'
13966 5' -53.4 NC_003521.1 + 77370 0.68 0.964527
Target:  5'- aGUGCAUGcgCGAGUgccgcgaccccaUGCGCCGCa-- -3'
miRNA:   3'- aCGUGUGCaaGUUCA------------ACGCGGCGcac -5'
13966 5' -53.4 NC_003521.1 + 149200 0.68 0.953733
Target:  5'- aGCACACGcgCcAGcacgGCGCUGCGg- -3'
miRNA:   3'- aCGUGUGCaaGuUCaa--CGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 144439 0.75 0.689095
Target:  5'- aGCGCGCGg-CAGGcgGCGCCgGCGUGc -3'
miRNA:   3'- aCGUGUGCaaGUUCaaCGCGG-CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 152895 0.67 0.970658
Target:  5'- -uCGCACGUUCcgccUGCGCCGCcUGg -3'
miRNA:   3'- acGUGUGCAAGuucaACGCGGCGcAC- -5'
13966 5' -53.4 NC_003521.1 + 68701 0.74 0.757707
Target:  5'- gGCACGCGgUUGAGggGCGCCgGCGg- -3'
miRNA:   3'- aCGUGUGCaAGUUCaaCGCGG-CGCac -5'
13966 5' -53.4 NC_003521.1 + 88523 0.69 0.93121
Target:  5'- aGCACuCGgUCAAGcugGCGCCGCa-- -3'
miRNA:   3'- aCGUGuGCaAGUUCaa-CGCGGCGcac -5'
13966 5' -53.4 NC_003521.1 + 72484 0.67 0.97342
Target:  5'- cGUGCACGg-CGAG-UGCGCCuCGUGc -3'
miRNA:   3'- aCGUGUGCaaGUUCaACGCGGcGCAC- -5'
13966 5' -53.4 NC_003521.1 + 7715 0.67 0.980148
Target:  5'- cGCACgucccGCGUggugcugUGCGCCGCGUc -3'
miRNA:   3'- aCGUG-----UGCAaguuca-ACGCGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 44764 0.74 0.757707
Target:  5'- aGCGCAUGggCcgguuGUUGCGCUGCGUc -3'
miRNA:   3'- aCGUGUGCaaGuu---CAACGCGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 132538 0.71 0.889849
Target:  5'- gGCACACGgUCAAGagguugGCGuuGCGg- -3'
miRNA:   3'- aCGUGUGCaAGUUCaa----CGCggCGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.