miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 5' -53.4 NC_003521.1 + 7715 0.67 0.980148
Target:  5'- cGCACgucccGCGUggugcugUGCGCCGCGUc -3'
miRNA:   3'- aCGUG-----UGCAaguuca-ACGCGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 26056 0.66 0.986183
Target:  5'- aGCugAUGgu-GGGcUGCaGCCGCGUGg -3'
miRNA:   3'- aCGugUGCaagUUCaACG-CGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 26270 0.66 0.989167
Target:  5'- cUGCACAUGggUCugcg-GCGCUGCGg- -3'
miRNA:   3'- -ACGUGUGCa-AGuucaaCGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 29597 0.66 0.990084
Target:  5'- aGCGCACGUagucggugCAaaugaaagcguccuGGUUGCGCacguaGCGUa -3'
miRNA:   3'- aCGUGUGCAa-------GU--------------UCAACGCGg----CGCAc -5'
13966 5' -53.4 NC_003521.1 + 31380 1.08 0.008736
Target:  5'- cUGCACACGUUCAAGUUGCGCCGCGUGu -3'
miRNA:   3'- -ACGUGUGCAAGUUCAACGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 38987 0.67 0.978372
Target:  5'- aGCACGCGcUUAAGUaGCGCCaccaggacgcccGCGa- -3'
miRNA:   3'- aCGUGUGCaAGUUCAaCGCGG------------CGCac -5'
13966 5' -53.4 NC_003521.1 + 40773 0.73 0.803613
Target:  5'- cUGCugGaggaGUUCGAGaUGCGCUGCGg- -3'
miRNA:   3'- -ACGugUg---CAAGUUCaACGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 44764 0.74 0.757707
Target:  5'- aGCGCAUGggCcgguuGUUGCGCUGCGUc -3'
miRNA:   3'- aCGUGUGCaaGuu---CAACGCGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 54413 0.68 0.957551
Target:  5'- aUGCGCAUGUUC---UUGaCGCCGUGg- -3'
miRNA:   3'- -ACGUGUGCAAGuucAAC-GCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 54904 0.7 0.926004
Target:  5'- cUGCGCAcCGUuugCAGGaucaGCGCCgGCGUGg -3'
miRNA:   3'- -ACGUGU-GCAa--GUUCaa--CGCGG-CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 56095 0.72 0.853572
Target:  5'- aGCACGCGcagaUCgAAGUaGCGUCGCGUa -3'
miRNA:   3'- aCGUGUGCa---AG-UUCAaCGCGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 56447 0.68 0.961147
Target:  5'- gGCugAUGgUCAAccuGUcGCGCUGCGUGu -3'
miRNA:   3'- aCGugUGCaAGUU---CAaCGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 57574 0.69 0.936181
Target:  5'- cGCGCGCcUUCGAGg-GCGCCgGCGg- -3'
miRNA:   3'- aCGUGUGcAAGUUCaaCGCGG-CGCac -5'
13966 5' -53.4 NC_003521.1 + 60071 0.66 0.987745
Target:  5'- aGCACGCGgUCca---GCGCCGUGUc -3'
miRNA:   3'- aCGUGUGCaAGuucaaCGCGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 63920 0.67 0.980575
Target:  5'- aGCuCugGUUCAcgggcacggGGUUGCGCgUGCGg- -3'
miRNA:   3'- aCGuGugCAAGU---------UCAACGCG-GCGCac -5'
13966 5' -53.4 NC_003521.1 + 65289 0.66 0.990457
Target:  5'- cUGCACGCGggcCAGGaUGCGCgugcuaggggCGCGg- -3'
miRNA:   3'- -ACGUGUGCaa-GUUCaACGCG----------GCGCac -5'
13966 5' -53.4 NC_003521.1 + 66937 0.66 0.987745
Target:  5'- gGCaACGuggUGUUCAAGUaccugGCGCUGCGg- -3'
miRNA:   3'- aCG-UGU---GCAAGUUCAa----CGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 68701 0.74 0.757707
Target:  5'- gGCACGCGgUUGAGggGCGCCgGCGg- -3'
miRNA:   3'- aCGUGUGCaAGUUCaaCGCGG-CGCac -5'
13966 5' -53.4 NC_003521.1 + 71995 0.76 0.628336
Target:  5'- cGCGCAgcuCGcuggggcccagcUUCAGGaUGCGCCGCGUGg -3'
miRNA:   3'- aCGUGU---GC------------AAGUUCaACGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 72484 0.67 0.97342
Target:  5'- cGUGCACGg-CGAG-UGCGCCuCGUGc -3'
miRNA:   3'- aCGUGUGCaaGUUCaACGCGGcGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.