miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 5' -53.4 NC_003521.1 + 229810 0.67 0.980575
Target:  5'- gGCugACGUUCA--UUGCGgCCG-GUGc -3'
miRNA:   3'- aCGugUGCAAGUucAACGC-GGCgCAC- -5'
13966 5' -53.4 NC_003521.1 + 226343 0.77 0.567656
Target:  5'- gUGCGCGCGccccgCGGGUaGCGCCGCGg- -3'
miRNA:   3'- -ACGUGUGCaa---GUUCAaCGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 223656 0.67 0.980575
Target:  5'- cGcCACACGgcccgcgUCGGG--GCGCCGCGa- -3'
miRNA:   3'- aC-GUGUGCa------AGUUCaaCGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 222256 0.7 0.902826
Target:  5'- aGCGCGCucUCcAGcUGCGCgCGCGUGa -3'
miRNA:   3'- aCGUGUGcaAGuUCaACGCG-GCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 221987 0.69 0.93121
Target:  5'- cGCACuCGUUguAGggcaUGUGCgGCGUGg -3'
miRNA:   3'- aCGUGuGCAAguUCa---ACGCGgCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 204649 0.66 0.989167
Target:  5'- gGC-CGCGgagaCGAGUUGCGCuCGCu-- -3'
miRNA:   3'- aCGuGUGCaa--GUUCAACGCG-GCGcac -5'
13966 5' -53.4 NC_003521.1 + 196604 0.66 0.990457
Target:  5'- cUGCACGCGcuggaaaUCGAGcUGCaGCCGcCGUc -3'
miRNA:   3'- -ACGUGUGCa------AGUUCaACG-CGGC-GCAc -5'
13966 5' -53.4 NC_003521.1 + 180638 0.69 0.93121
Target:  5'- gGCGCGCGUUCuca---CGCCGCGg- -3'
miRNA:   3'- aCGUGUGCAAGuucaacGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 172351 0.67 0.970658
Target:  5'- gGCACACGUcgggCGGGUgggucacggGCaCCGUGUGu -3'
miRNA:   3'- aCGUGUGCAa---GUUCAa--------CGcGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 172195 0.68 0.956429
Target:  5'- gGCACAUGUUCAGG--GCGCCcaggaaguccacggGgGUGg -3'
miRNA:   3'- aCGUGUGCAAGUUCaaCGCGG--------------CgCAC- -5'
13966 5' -53.4 NC_003521.1 + 168584 0.67 0.980575
Target:  5'- aGCACAUcUUCGAGgagguggcGCGCCucauGCGUGu -3'
miRNA:   3'- aCGUGUGcAAGUUCaa------CGCGG----CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 166386 0.72 0.829388
Target:  5'- gUGCGCACGUacuugagcugcgUCAAGUcGUaGCCGCGg- -3'
miRNA:   3'- -ACGUGUGCA------------AGUUCAaCG-CGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 153896 0.76 0.618172
Target:  5'- aGCGCGCGguaGGGgaacaGCGCCGCGUGc -3'
miRNA:   3'- aCGUGUGCaagUUCaa---CGCGGCGCAC- -5'
13966 5' -53.4 NC_003521.1 + 153790 0.7 0.908971
Target:  5'- gUGCGCGUGUUCAAGaaggUGCGCaGCGa- -3'
miRNA:   3'- -ACGUGUGCAAGUUCa---ACGCGgCGCac -5'
13966 5' -53.4 NC_003521.1 + 153394 0.66 0.986183
Target:  5'- aGCGCAggaucuccuCGUgCAGG-UGCGCCaccgGCGUGg -3'
miRNA:   3'- aCGUGU---------GCAaGUUCaACGCGG----CGCAC- -5'
13966 5' -53.4 NC_003521.1 + 152895 0.67 0.970658
Target:  5'- -uCGCACGUUCcgccUGCGCCGCcUGg -3'
miRNA:   3'- acGUGUGCAAGuucaACGCGGCGcAC- -5'
13966 5' -53.4 NC_003521.1 + 150376 0.72 0.853572
Target:  5'- aGCGCACGUagGGGUUGaaGUCGCGUc -3'
miRNA:   3'- aCGUGUGCAagUUCAACg-CGGCGCAc -5'
13966 5' -53.4 NC_003521.1 + 150283 0.7 0.926004
Target:  5'- cGCGCACGUgcacgugaAGGUgGCGUCGuCGUGc -3'
miRNA:   3'- aCGUGUGCAag------UUCAaCGCGGC-GCAC- -5'
13966 5' -53.4 NC_003521.1 + 149200 0.68 0.953733
Target:  5'- aGCACACGcgCcAGcacgGCGCUGCGg- -3'
miRNA:   3'- aCGUGUGCaaGuUCaa--CGCGGCGCac -5'
13966 5' -53.4 NC_003521.1 + 148805 0.71 0.861246
Target:  5'- cUGCGgACGUUCAucgUGCGCgGCGa- -3'
miRNA:   3'- -ACGUgUGCAAGUucaACGCGgCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.