miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 44106 0.67 0.944586
Target:  5'- -gGCGCCUGuGAcGGgcccGCGGCCGGCGgCg -3'
miRNA:   3'- gaCGCGGAC-CU-CU----UGUUGGCUGUgGa -5'
13968 3' -55.5 NC_003521.1 + 211666 0.67 0.944586
Target:  5'- gUGCGCC-GGcugcuGCAcgagaGCCGGCGCCUg -3'
miRNA:   3'- gACGCGGaCCucu--UGU-----UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 154709 0.67 0.944586
Target:  5'- -cGCGCgaGGAGAACAccauccAgCGGCugCa -3'
miRNA:   3'- gaCGCGgaCCUCUUGU------UgGCUGugGa -5'
13968 3' -55.5 NC_003521.1 + 145800 0.67 0.944586
Target:  5'- -aGCGCUcGGAGGugAucgucuUCGACGCCa -3'
miRNA:   3'- gaCGCGGaCCUCUugUu-----GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 129798 0.67 0.944149
Target:  5'- -aGCGCCgccgcgaUGGAGAACuggUCGGCGCUc -3'
miRNA:   3'- gaCGCGG-------ACCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 124186 0.67 0.944149
Target:  5'- gUGCGCCugccggcUGGGGGugAGCgGGC-CCUu -3'
miRNA:   3'- gACGCGG-------ACCUCUugUUGgCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 130771 0.67 0.942825
Target:  5'- -cGCGCCgGGGGAGCAGaaagggaagaagaCGGcCACCa -3'
miRNA:   3'- gaCGCGGaCCUCUUGUUg------------GCU-GUGGa -5'
13968 3' -55.5 NC_003521.1 + 105850 0.67 0.940116
Target:  5'- gCUGCGCCggcGGcGGcgacgacacgGCGGCgGACGCCg -3'
miRNA:   3'- -GACGCGGa--CCuCU----------UGUUGgCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 195405 0.67 0.940116
Target:  5'- -cGCGCCgacGGcGGGC-ACCGGCuACCUg -3'
miRNA:   3'- gaCGCGGa--CCuCUUGuUGGCUG-UGGA- -5'
13968 3' -55.5 NC_003521.1 + 29445 0.67 0.940116
Target:  5'- -aGCGCgUGGGccaguucauGAuccGCGACCGGCugCUg -3'
miRNA:   3'- gaCGCGgACCU---------CU---UGUUGGCUGugGA- -5'
13968 3' -55.5 NC_003521.1 + 102333 0.67 0.940116
Target:  5'- gUGCGCgUGGGc----GCCGACGCCg -3'
miRNA:   3'- gACGCGgACCUcuuguUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 211404 0.67 0.93542
Target:  5'- -gGCGaCUGGAGGAUGAuccgcugcguccUCGGCGCCUg -3'
miRNA:   3'- gaCGCgGACCUCUUGUU------------GGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 10770 0.67 0.934454
Target:  5'- -cGcCGCCUGGGGGGCcacgccauccccGCCGGCGCa- -3'
miRNA:   3'- gaC-GCGGACCUCUUGu-----------UGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 128697 0.67 0.932494
Target:  5'- -aGCGCucggucaucCUGGAGAaccugcggcgcgucuACAaaaacACCGACACCa -3'
miRNA:   3'- gaCGCG---------GACCUCU---------------UGU-----UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 116328 0.67 0.930497
Target:  5'- gCUGCGCCUGGAaGAGCucaaGAU-CCUg -3'
miRNA:   3'- -GACGCGGACCU-CUUGuuggCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 133351 0.67 0.930497
Target:  5'- -gGCGCCggacgUGGAGAucaGCAcgguccGCCGGCACa- -3'
miRNA:   3'- gaCGCGG-----ACCUCU---UGU------UGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 42017 0.67 0.929992
Target:  5'- -gGCGUCUgcaggaugacgaaGGAGAGCAGCagGACGCUg -3'
miRNA:   3'- gaCGCGGA-------------CCUCUUGUUGg-CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 85104 0.68 0.925345
Target:  5'- gCUGCGUUUGGAucacuGCGACCGcCAUCa -3'
miRNA:   3'- -GACGCGGACCUcu---UGUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 39564 0.68 0.925345
Target:  5'- aUGCuGCCUGG-GAGaGugUGACGCCg -3'
miRNA:   3'- gACG-CGGACCuCUUgUugGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 78830 0.68 0.925345
Target:  5'- -gGCGUCaacgGGGGuGCGacACCGGCGCCg -3'
miRNA:   3'- gaCGCGGa---CCUCuUGU--UGGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.