Results 41 - 60 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13968 | 3' | -55.5 | NC_003521.1 | + | 153704 | 0.67 | 0.952856 |
Target: 5'- gCUG-GCCUacGAGcGCGACCGGCugCUg -3' miRNA: 3'- -GACgCGGAc-CUCuUGUUGGCUGugGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 226972 | 0.67 | 0.952856 |
Target: 5'- cCUGUGUCUGGGuccgccGAAgGGCUGGCACg- -3' miRNA: 3'- -GACGCGGACCU------CUUgUUGGCUGUGga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 56932 | 0.67 | 0.952856 |
Target: 5'- aCUGCGaCCUGGugcgcGAGCGggaggugcACCGGC-CCg -3' miRNA: 3'- -GACGC-GGACCu----CUUGU--------UGGCUGuGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 28020 | 0.67 | 0.952856 |
Target: 5'- gCUGCGCCgucgGGAcGACAuCgCGGCGCUc -3' miRNA: 3'- -GACGCGGa---CCUcUUGUuG-GCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 211108 | 0.67 | 0.952856 |
Target: 5'- -cGCGCCgaGGcucAGCAGCCaGGCGCCg -3' miRNA: 3'- gaCGCGGa-CCuc-UUGUUGG-CUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 7743 | 0.67 | 0.952856 |
Target: 5'- uUGCGCCUGGAucgccGGACuGCUGAuCAUUg -3' miRNA: 3'- gACGCGGACCU-----CUUGuUGGCU-GUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 226935 | 0.67 | 0.952856 |
Target: 5'- uUGCGCCUaGAGGACGagaucAUCGucaGCGCCa -3' miRNA: 3'- gACGCGGAcCUCUUGU-----UGGC---UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 168245 | 0.67 | 0.952856 |
Target: 5'- -aGCGCCUGGAacGCGuuGCCG-CACg- -3' miRNA: 3'- gaCGCGGACCUcuUGU--UGGCuGUGga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 46369 | 0.67 | 0.952463 |
Target: 5'- gCUGCGUCcGGAG-GCGGCgcuacaaggucugCGACGCCg -3' miRNA: 3'- -GACGCGGaCCUCuUGUUG-------------GCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 45268 | 0.67 | 0.948832 |
Target: 5'- -aGCGCuucCUGGAGaucAugGACCGgGCGCCg -3' miRNA: 3'- gaCGCG---GACCUC---UugUUGGC-UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 110146 | 0.67 | 0.948832 |
Target: 5'- -cGCGCCgUGGAGAugGcacgcaagGCCuuCACCg -3' miRNA: 3'- gaCGCGG-ACCUCUugU--------UGGcuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 222516 | 0.67 | 0.948832 |
Target: 5'- -cGCGCagCUGGAGAGCGcGCuCGACugguuCCUg -3' miRNA: 3'- gaCGCG--GACCUCUUGU-UG-GCUGu----GGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 215324 | 0.67 | 0.948832 |
Target: 5'- -aGCGUgUaGaAGAGCAgcACCGACACCUu -3' miRNA: 3'- gaCGCGgAcC-UCUUGU--UGGCUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 137882 | 0.67 | 0.948832 |
Target: 5'- -aGCGCCUGGAccGCGACgccuCGGC-CCUc -3' miRNA: 3'- gaCGCGGACCUcuUGUUG----GCUGuGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 142703 | 0.67 | 0.948832 |
Target: 5'- -cGUGCCUGaAGAcGCugguGCCGACGCUg -3' miRNA: 3'- gaCGCGGACcUCU-UGu---UGGCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 73503 | 0.67 | 0.948832 |
Target: 5'- -aGCGCgugucgaUGGAGAGCGGCgcgcagaGGCGCCg -3' miRNA: 3'- gaCGCGg------ACCUCUUGUUGg------CUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 26962 | 0.67 | 0.948832 |
Target: 5'- --cCGCCUGGGGGAUAACCu-CugCa -3' miRNA: 3'- gacGCGGACCUCUUGUUGGcuGugGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 84957 | 0.67 | 0.94716 |
Target: 5'- -gGCcgGCCUGGAGGugugcacGCAGCugcuggcgcugcugCGACGCCUg -3' miRNA: 3'- gaCG--CGGACCUCU-------UGUUG--------------GCUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 154709 | 0.67 | 0.944586 |
Target: 5'- -cGCGCgaGGAGAACAccauccAgCGGCugCa -3' miRNA: 3'- gaCGCGgaCCUCUUGU------UgGCUGugGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 24571 | 0.67 | 0.944586 |
Target: 5'- gCUGUGCCcGGAGGggacgaggaaGCGauACCGAUggACCUg -3' miRNA: 3'- -GACGCGGaCCUCU----------UGU--UGGCUG--UGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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