miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 136969 0.66 0.963632
Target:  5'- gCUGCGCgaGGAGAucgaggcCAACCGgauagaucgGCAUCa -3'
miRNA:   3'- -GACGCGgaCCUCUu------GUUGGC---------UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 116144 0.66 0.963632
Target:  5'- -gGCGCaggugaaGGAGAACuuGCCGgugcGCACCUg -3'
miRNA:   3'- gaCGCGga-----CCUCUUGu-UGGC----UGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 150479 0.66 0.963632
Target:  5'- -aGCGCCUGGuGGGgcccuuCAGCuuuuaCGGCGCCg -3'
miRNA:   3'- gaCGCGGACCuCUU------GUUG-----GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 125838 0.66 0.963632
Target:  5'- uCUGCGUCgagGGcacGGAACAACUGAUcgaaaacccguGCCg -3'
miRNA:   3'- -GACGCGGa--CC---UCUUGUUGGCUG-----------UGGa -5'
13968 3' -55.5 NC_003521.1 + 231832 0.66 0.963632
Target:  5'- aUGaCGCUgaGGGGGAUGACaaaGGCACCUa -3'
miRNA:   3'- gAC-GCGGa-CCUCUUGUUGg--CUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 103877 0.66 0.963632
Target:  5'- -aGCGCCgacagGGGGAugGGCUGcCGCg- -3'
miRNA:   3'- gaCGCGGa----CCUCUugUUGGCuGUGga -5'
13968 3' -55.5 NC_003521.1 + 213711 0.66 0.963632
Target:  5'- gUGgGCCUcGGGGAugccCAGCCagacGGCGCCg -3'
miRNA:   3'- gACgCGGA-CCUCUu---GUUGG----CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 116900 0.66 0.960252
Target:  5'- -cGCGCCggcgGGAGAccccuuucGCu-CCGACAgCUa -3'
miRNA:   3'- gaCGCGGa---CCUCU--------UGuuGGCUGUgGA- -5'
13968 3' -55.5 NC_003521.1 + 63151 0.66 0.960252
Target:  5'- gCUGCGCg-GGcuGACGAUCGACGCg- -3'
miRNA:   3'- -GACGCGgaCCucUUGUUGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 219253 0.66 0.960252
Target:  5'- -aGCGCCgGGuAGAGCAgggcccgcagggGCUGGCACa- -3'
miRNA:   3'- gaCGCGGaCC-UCUUGU------------UGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 142118 0.66 0.960252
Target:  5'- gUGCGaCCUGGAGcuggaggcgGACGACgCGgaaaACGCCa -3'
miRNA:   3'- gACGC-GGACCUC---------UUGUUG-GC----UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 222603 0.66 0.960252
Target:  5'- gUGuCGCCUGGAGGAgcugccCGugUGcCACCa -3'
miRNA:   3'- gAC-GCGGACCUCUU------GUugGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 193036 0.66 0.960252
Target:  5'- -cGUGCCggUGGAGAucgagcugauggACGGCCcgcgGACGCCg -3'
miRNA:   3'- gaCGCGG--ACCUCU------------UGUUGG----CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 224674 0.66 0.956662
Target:  5'- -aGCGCCUGGccGGCGagguguACCGGCugGCCg -3'
miRNA:   3'- gaCGCGGACCucUUGU------UGGCUG--UGGa -5'
13968 3' -55.5 NC_003521.1 + 219007 0.66 0.956662
Target:  5'- -cGCaGCaUGGGGGACcgucCCGACGCCg -3'
miRNA:   3'- gaCG-CGgACCUCUUGuu--GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 45911 0.66 0.956662
Target:  5'- gUGCGCCggaccccgcGGAGccGGCGGCgGugGCCg -3'
miRNA:   3'- gACGCGGa--------CCUC--UUGUUGgCugUGGa -5'
13968 3' -55.5 NC_003521.1 + 228372 0.66 0.956291
Target:  5'- gCUGCuacgcgcgcaacaGCCUGGAcGAGguuuCCGGCGCCUc -3'
miRNA:   3'- -GACG-------------CGGACCU-CUUguu-GGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 128128 0.66 0.956291
Target:  5'- -cGCGCaucCUGGuGGGCAACCugcccgacgggcuGGCGCCg -3'
miRNA:   3'- gaCGCG---GACCuCUUGUUGG-------------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 168241 0.66 0.956291
Target:  5'- gUGCGCCUGGuGGucgaaaaGCAGCCaGACGu-- -3'
miRNA:   3'- gACGCGGACCuCU-------UGUUGG-CUGUgga -5'
13968 3' -55.5 NC_003521.1 + 168362 0.66 0.956291
Target:  5'- -gGCGCgugUUGGAGGGCAuCCGACcggugguGCCg -3'
miRNA:   3'- gaCGCG---GACCUCUUGUuGGCUG-------UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.