miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 31920 1.08 0.005712
Target:  5'- gCUGCGCCUGGAGAACAACCGACACCUg -3'
miRNA:   3'- -GACGCGGACCUCUUGUUGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 34454 0.66 0.969779
Target:  5'- gCUGCggGCCUGGGGGuCGucGCCGcAgGCCa -3'
miRNA:   3'- -GACG--CGGACCUCUuGU--UGGC-UgUGGa -5'
13968 3' -55.5 NC_003521.1 + 34696 0.66 0.966806
Target:  5'- -aGCGCCuacgUGGAGucGCAcCgCGACGCCc -3'
miRNA:   3'- gaCGCGG----ACCUCu-UGUuG-GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 35332 0.68 0.902465
Target:  5'- -aGCGCCcGGAGGAaGACCugugugguGGCGCCg -3'
miRNA:   3'- gaCGCGGaCCUCUUgUUGG--------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 36846 0.68 0.925345
Target:  5'- gCUGUGCCgGGuAGAGCAcCUGACguggGCCg -3'
miRNA:   3'- -GACGCGGaCC-UCUUGUuGGCUG----UGGa -5'
13968 3' -55.5 NC_003521.1 + 38233 0.68 0.914358
Target:  5'- -gGgGCCgaGGAGAGC-AUUGACGCCg -3'
miRNA:   3'- gaCgCGGa-CCUCUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 39564 0.68 0.925345
Target:  5'- aUGCuGCCUGG-GAGaGugUGACGCCg -3'
miRNA:   3'- gACG-CGGACCuCUUgUugGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 39860 0.68 0.919966
Target:  5'- -cGcCGCCacccagGGcAGGACcGCCGACGCCg -3'
miRNA:   3'- gaC-GCGGa-----CC-UCUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 40194 0.66 0.969779
Target:  5'- -aGCuGCUggcGGAGGACAuccacaucuacAUCGACGCCUu -3'
miRNA:   3'- gaCG-CGGa--CCUCUUGU-----------UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 41873 0.66 0.966806
Target:  5'- -cGCGCCUGGuGccCAACCucCACUg -3'
miRNA:   3'- gaCGCGGACCuCuuGUUGGcuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 42017 0.67 0.929992
Target:  5'- -gGCGUCUgcaggaugacgaaGGAGAGCAGCagGACGCUg -3'
miRNA:   3'- gaCGCGGA-------------CCUCUUGUUGg-CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 44106 0.67 0.944586
Target:  5'- -gGCGCCUGuGAcGGgcccGCGGCCGGCGgCg -3'
miRNA:   3'- gaCGCGGAC-CU-CU----UGUUGGCUGUgGa -5'
13968 3' -55.5 NC_003521.1 + 44641 0.73 0.672836
Target:  5'- aUGCGCCuguggguguUGGAGAaguGCAACCGGCucugcgacgACCUg -3'
miRNA:   3'- gACGCGG---------ACCUCU---UGUUGGCUG---------UGGA- -5'
13968 3' -55.5 NC_003521.1 + 45268 0.67 0.948832
Target:  5'- -aGCGCuucCUGGAGaucAugGACCGgGCGCCg -3'
miRNA:   3'- gaCGCG---GACCUC---UugUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 45911 0.66 0.956662
Target:  5'- gUGCGCCggaccccgcGGAGccGGCGGCgGugGCCg -3'
miRNA:   3'- gACGCGGa--------CCUC--UUGUUGgCugUGGa -5'
13968 3' -55.5 NC_003521.1 + 46369 0.67 0.952463
Target:  5'- gCUGCGUCcGGAG-GCGGCgcuacaaggucugCGACGCCg -3'
miRNA:   3'- -GACGCGGaCCUCuUGUUG-------------GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 46789 0.76 0.534042
Target:  5'- gUGCGCCUGGAGAAgAcgcccguguGCCaGCACCc -3'
miRNA:   3'- gACGCGGACCUCUUgU---------UGGcUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 54585 0.71 0.796248
Target:  5'- gUGCGCCUGGugacGGAGCA--CGACGCgCUg -3'
miRNA:   3'- gACGCGGACC----UCUUGUugGCUGUG-GA- -5'
13968 3' -55.5 NC_003521.1 + 55214 0.7 0.822008
Target:  5'- gUGCGCUcaaGGAGAACAccACCGuCACUUu -3'
miRNA:   3'- gACGCGGa--CCUCUUGU--UGGCuGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 55295 0.66 0.969779
Target:  5'- -cGCGUCUcucGGAGCcGCCGACGCUg -3'
miRNA:   3'- gaCGCGGAcc-UCUUGuUGGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.