miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 5685 0.69 0.868896
Target:  5'- -gGCGCCcguccgcGGGGAACGggcGCCGuCACCg -3'
miRNA:   3'- gaCGCGGa------CCUCUUGU---UGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 7743 0.67 0.952856
Target:  5'- uUGCGCCUGGAucgccGGACuGCUGAuCAUUg -3'
miRNA:   3'- gACGCGGACCU-----CUUGuUGGCU-GUGGa -5'
13968 3' -55.5 NC_003521.1 + 10770 0.67 0.934454
Target:  5'- -cGcCGCCUGGGGGGCcacgccauccccGCCGGCGCa- -3'
miRNA:   3'- gaC-GCGGACCUCUUGu-----------UGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 16573 0.69 0.861555
Target:  5'- gCUGCGCCUGcGAG-GCGACCGGgGa-- -3'
miRNA:   3'- -GACGCGGAC-CUCuUGUUGGCUgUgga -5'
13968 3' -55.5 NC_003521.1 + 17102 0.66 0.966806
Target:  5'- cCUGCGCCgGcGAGGACggUCGGuccuCAUCg -3'
miRNA:   3'- -GACGCGGaC-CUCUUGuuGGCU----GUGGa -5'
13968 3' -55.5 NC_003521.1 + 17464 0.69 0.889682
Target:  5'- -aGCGCUcGGAGGAgAGacgaCGGCACCg -3'
miRNA:   3'- gaCGCGGaCCUCUUgUUg---GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 17727 0.73 0.692634
Target:  5'- -gGUGCCgggGGAGAACccgucGGCCGAgGCCg -3'
miRNA:   3'- gaCGCGGa--CCUCUUG-----UUGGCUgUGGa -5'
13968 3' -55.5 NC_003521.1 + 17775 0.71 0.787369
Target:  5'- -cGCGCCgccgGGccgGGAACcGCCGugACCg -3'
miRNA:   3'- gaCGCGGa---CC---UCUUGuUGGCugUGGa -5'
13968 3' -55.5 NC_003521.1 + 21094 0.77 0.468123
Target:  5'- gCUGCGCCaaUGGAGAGauaGACCGuuGCCUc -3'
miRNA:   3'- -GACGCGG--ACCUCUUg--UUGGCugUGGA- -5'
13968 3' -55.5 NC_003521.1 + 22988 0.69 0.861555
Target:  5'- uCUGCGCCUGGuuGACGgugauAgCGGCAUCc -3'
miRNA:   3'- -GACGCGGACCucUUGU-----UgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 24571 0.67 0.944586
Target:  5'- gCUGUGCCcGGAGGggacgaggaaGCGauACCGAUggACCUg -3'
miRNA:   3'- -GACGCGGaCCUCU----------UGU--UGGCUG--UGGA- -5'
13968 3' -55.5 NC_003521.1 + 24947 0.74 0.632923
Target:  5'- uUGCGCgUGGAGAACGaagaaccuGCCGuCACUa -3'
miRNA:   3'- gACGCGgACCUCUUGU--------UGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 25650 0.68 0.908524
Target:  5'- -cGgGUCUGG-GAGCAGgguguCCGGCGCCg -3'
miRNA:   3'- gaCgCGGACCuCUUGUU-----GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 26088 0.69 0.876034
Target:  5'- aCUGUacGCCUGGAGcgaacuguACGGCUGGCAgCUg -3'
miRNA:   3'- -GACG--CGGACCUCu-------UGUUGGCUGUgGA- -5'
13968 3' -55.5 NC_003521.1 + 26526 0.68 0.908524
Target:  5'- -gGUGCCUGGGGuGCAGCa-GCGCUg -3'
miRNA:   3'- gaCGCGGACCUCuUGUUGgcUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 26962 0.67 0.948832
Target:  5'- --cCGCCUGGGGGAUAACCu-CugCa -3'
miRNA:   3'- gacGCGGACCUCUUGUUGGcuGugGa -5'
13968 3' -55.5 NC_003521.1 + 27282 0.72 0.731583
Target:  5'- -cGCGCCUGGAGccuCGguuucgauGCCGugGCCc -3'
miRNA:   3'- gaCGCGGACCUCuu-GU--------UGGCugUGGa -5'
13968 3' -55.5 NC_003521.1 + 28020 0.67 0.952856
Target:  5'- gCUGCGCCgucgGGAcGACAuCgCGGCGCUc -3'
miRNA:   3'- -GACGCGGa---CCUcUUGUuG-GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 28840 0.69 0.861555
Target:  5'- -gGCGCCUGGAcGAcgagcugcgGCGGCgCGGCACg- -3'
miRNA:   3'- gaCGCGGACCU-CU---------UGUUG-GCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 29445 0.67 0.940116
Target:  5'- -aGCGCgUGGGccaguucauGAuccGCGACCGGCugCUg -3'
miRNA:   3'- gaCGCGgACCU---------CU---UGUUGGCUGugGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.