miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 136969 0.66 0.963632
Target:  5'- gCUGCGCgaGGAGAucgaggcCAACCGgauagaucgGCAUCa -3'
miRNA:   3'- -GACGCGgaCCUCUu------GUUGGC---------UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 70721 0.66 0.969779
Target:  5'- cCUGCGCC-GGAugu--ACCGGCACUUc -3'
miRNA:   3'- -GACGCGGaCCUcuuguUGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 150479 0.66 0.963632
Target:  5'- -aGCGCCUGGuGGGgcccuuCAGCuuuuaCGGCGCCg -3'
miRNA:   3'- gaCGCGGACCuCUU------GUUG-----GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 116900 0.66 0.960252
Target:  5'- -cGCGCCggcgGGAGAccccuuucGCu-CCGACAgCUa -3'
miRNA:   3'- gaCGCGGa---CCUCU--------UGuuGGCUGUgGA- -5'
13968 3' -55.5 NC_003521.1 + 219253 0.66 0.960252
Target:  5'- -aGCGCCgGGuAGAGCAgggcccgcagggGCUGGCACa- -3'
miRNA:   3'- gaCGCGGaCC-UCUUGU------------UGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 142118 0.66 0.960252
Target:  5'- gUGCGaCCUGGAGcuggaggcgGACGACgCGgaaaACGCCa -3'
miRNA:   3'- gACGC-GGACCUC---------UUGUUG-GC----UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 109974 0.66 0.966806
Target:  5'- cCUGCGCCUGcaguAGGGCGGCCu--GCCg -3'
miRNA:   3'- -GACGCGGACc---UCUUGUUGGcugUGGa -5'
13968 3' -55.5 NC_003521.1 + 103877 0.66 0.963632
Target:  5'- -aGCGCCgacagGGGGAugGGCUGcCGCg- -3'
miRNA:   3'- gaCGCGGa----CCUCUugUUGGCuGUGga -5'
13968 3' -55.5 NC_003521.1 + 63151 0.66 0.960252
Target:  5'- gCUGCGCg-GGcuGACGAUCGACGCg- -3'
miRNA:   3'- -GACGCGgaCCucUUGUUGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 41873 0.66 0.966806
Target:  5'- -cGCGCCUGGuGccCAACCucCACUg -3'
miRNA:   3'- gaCGCGGACCuCuuGUUGGcuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 91922 0.66 0.969779
Target:  5'- aUGCGCCaGG-GAGCcGCgGGCACg- -3'
miRNA:   3'- gACGCGGaCCuCUUGuUGgCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 57576 0.66 0.969779
Target:  5'- -cGCGCCUucGAGGGCG-CCGGCGgCg -3'
miRNA:   3'- gaCGCGGAc-CUCUUGUuGGCUGUgGa -5'
13968 3' -55.5 NC_003521.1 + 228372 0.66 0.956291
Target:  5'- gCUGCuacgcgcgcaacaGCCUGGAcGAGguuuCCGGCGCCUc -3'
miRNA:   3'- -GACG-------------CGGACCU-CUUguu-GGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 168362 0.66 0.956291
Target:  5'- -gGCGCgugUUGGAGGGCAuCCGACcggugguGCCg -3'
miRNA:   3'- gaCGCG---GACCUCUUGUuGGCUG-------UGGa -5'
13968 3' -55.5 NC_003521.1 + 233511 0.66 0.963632
Target:  5'- cCUGUGCCUucugcuccuGAGGACccuGCUGAUGCCUg -3'
miRNA:   3'- -GACGCGGAc--------CUCUUGu--UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 34454 0.66 0.969779
Target:  5'- gCUGCggGCCUGGGGGuCGucGCCGcAgGCCa -3'
miRNA:   3'- -GACG--CGGACCUCUuGU--UGGC-UgUGGa -5'
13968 3' -55.5 NC_003521.1 + 168241 0.66 0.956291
Target:  5'- gUGCGCCUGGuGGucgaaaaGCAGCCaGACGu-- -3'
miRNA:   3'- gACGCGGACCuCU-------UGUUGG-CUGUgga -5'
13968 3' -55.5 NC_003521.1 + 155860 0.66 0.969779
Target:  5'- -cGCGCUucgUGGAGAuccuGCAGaagGACACCUu -3'
miRNA:   3'- gaCGCGG---ACCUCU----UGUUgg-CUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 136054 0.66 0.969779
Target:  5'- gUGCGaCCUGGGcAGCGGCUGcGCGCUc -3'
miRNA:   3'- gACGC-GGACCUcUUGUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 116144 0.66 0.963632
Target:  5'- -gGCGCaggugaaGGAGAACuuGCCGgugcGCACCUg -3'
miRNA:   3'- gaCGCGga-----CCUCUUGu-UGGC----UGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.