miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 218439 0.71 0.778355
Target:  5'- -aGCGgCggcaccacGGAGGACAugGCCGGCACCa -3'
miRNA:   3'- gaCGCgGa-------CCUCUUGU--UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 144141 0.73 0.686712
Target:  5'- gUGCGCCUGGGcuccGAggcguugcucuucaaGCAcGCCGGCGCCg -3'
miRNA:   3'- gACGCGGACCU----CU---------------UGU-UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 17727 0.73 0.692634
Target:  5'- -gGUGCCgggGGAGAACccgucGGCCGAgGCCg -3'
miRNA:   3'- gaCGCGGa--CCUCUUG-----UUGGCUgUGGa -5'
13968 3' -55.5 NC_003521.1 + 109472 0.73 0.702464
Target:  5'- -cGCGUCUGG-GAACAugCG-CGCCa -3'
miRNA:   3'- gaCGCGGACCuCUUGUugGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 65095 0.72 0.712238
Target:  5'- -gGCGCCaGGAGGAaGAgCGGCGCCg -3'
miRNA:   3'- gaCGCGGaCCUCUUgUUgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 192239 0.72 0.712238
Target:  5'- -gGCGCCgcgGGAGggUGGCCGuuagccguCACCUu -3'
miRNA:   3'- gaCGCGGa--CCUCuuGUUGGCu-------GUGGA- -5'
13968 3' -55.5 NC_003521.1 + 63629 0.72 0.721948
Target:  5'- -cGcCGCCUGGAGAAguACCGcACGCg- -3'
miRNA:   3'- gaC-GCGGACCUCUUguUGGC-UGUGga -5'
13968 3' -55.5 NC_003521.1 + 116540 0.72 0.731583
Target:  5'- -cGCGCuuuCUGGAGAucguCAGCCG-CGCCUc -3'
miRNA:   3'- gaCGCG---GACCUCUu---GUUGGCuGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 67278 0.71 0.769217
Target:  5'- -cGgGCagGGAGGACAGCCGcuGCGCCUg -3'
miRNA:   3'- gaCgCGgaCCUCUUGUUGGC--UGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 44641 0.73 0.672836
Target:  5'- aUGCGCCuguggguguUGGAGAaguGCAACCGGCucugcgacgACCUg -3'
miRNA:   3'- gACGCGG---------ACCUCU---UGUUGGCUG---------UGGA- -5'
13968 3' -55.5 NC_003521.1 + 24947 0.74 0.632923
Target:  5'- uUGCGCgUGGAGAACGaagaaccuGCCGuCACUa -3'
miRNA:   3'- gACGCGgACCUCUUGU--------UGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 141804 0.75 0.592997
Target:  5'- aUGCGCCUGGAccucGAGCGGCaacaGCACCa -3'
miRNA:   3'- gACGCGGACCU----CUUGUUGgc--UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 226362 0.8 0.350477
Target:  5'- -aGCGCCgcgGGAGcGGCGGCUGACGCCg -3'
miRNA:   3'- gaCGCGGa--CCUC-UUGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 144192 0.79 0.379465
Target:  5'- -cGCGCgCUGGAGAacgGCAagcugcagcagugcGCCGACGCCUg -3'
miRNA:   3'- gaCGCG-GACCUCU---UGU--------------UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 21094 0.77 0.468123
Target:  5'- gCUGCGCCaaUGGAGAGauaGACCGuuGCCUc -3'
miRNA:   3'- -GACGCGG--ACCUCUUg--UUGGCugUGGA- -5'
13968 3' -55.5 NC_003521.1 + 164820 0.77 0.477296
Target:  5'- -aGCGCCcgcgGGGGAggaggaaccgGCGGCCGGCGCCa -3'
miRNA:   3'- gaCGCGGa---CCUCU----------UGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 129216 0.76 0.495901
Target:  5'- -gGCGCgUGGuGGGCAGuCCGGCGCCg -3'
miRNA:   3'- gaCGCGgACCuCUUGUU-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 71364 0.76 0.524401
Target:  5'- -cGCGCCUGGcGAcgaacccgccGCcGCCGACGCCg -3'
miRNA:   3'- gaCGCGGACCuCU----------UGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 73171 0.76 0.543744
Target:  5'- cCUGCGaCCUGGAcgcgGAGCuGGCCGGCAUCg -3'
miRNA:   3'- -GACGC-GGACCU----CUUG-UUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 59669 0.75 0.563314
Target:  5'- -cGCGCCUGGAGGA--GCUcaGACGCCa -3'
miRNA:   3'- gaCGCGGACCUCUUguUGG--CUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.