miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 31920 1.08 0.005712
Target:  5'- gCUGCGCCUGGAGAACAACCGACACCUg -3'
miRNA:   3'- -GACGCGGACCUCUUGUUGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 152883 0.72 0.759962
Target:  5'- cCUGCGCCgccUGGuGAcCAACCagGGCGCCg -3'
miRNA:   3'- -GACGCGG---ACCuCUuGUUGG--CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 222367 0.71 0.787369
Target:  5'- -aGCGCCUcGAGAcGCuGCCGGCGCUg -3'
miRNA:   3'- gaCGCGGAcCUCU-UGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 91922 0.66 0.969779
Target:  5'- aUGCGCCaGG-GAGCcGCgGGCACg- -3'
miRNA:   3'- gACGCGGaCCuCUUGuUGgCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 46789 0.76 0.534042
Target:  5'- gUGCGCCUGGAGAAgAcgcccguguGCCaGCACCc -3'
miRNA:   3'- gACGCGGACCUCUUgU---------UGGcUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 102259 0.75 0.583067
Target:  5'- cCUGUGCCUGGAcacGCAGCUG-CACCg -3'
miRNA:   3'- -GACGCGGACCUcu-UGUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 88464 0.74 0.609938
Target:  5'- -aGCaGCCUGGAGAAgGACCaccugaugcucagcGACGCCg -3'
miRNA:   3'- gaCG-CGGACCUCUUgUUGG--------------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 124190 0.74 0.622925
Target:  5'- -gGCGCCgcugcaacuggUGGAGAACAgcGCCGcGCGCCg -3'
miRNA:   3'- gaCGCGG-----------ACCUCUUGU--UGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 129057 0.72 0.712238
Target:  5'- -cGCGCCUGGuGGA-GGCCGcCACCg -3'
miRNA:   3'- gaCGCGGACCuCUUgUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 116920 0.72 0.759962
Target:  5'- -gGCGgCUGGAGAGCGagagGCCGGCguagcuGCCg -3'
miRNA:   3'- gaCGCgGACCUCUUGU----UGGCUG------UGGa -5'
13968 3' -55.5 NC_003521.1 + 57876 0.72 0.721948
Target:  5'- -cGUGCCUGGAGcGCGACgGcACGCUg -3'
miRNA:   3'- gaCGCGGACCUCuUGUUGgC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 153762 0.73 0.662886
Target:  5'- -aGCGCCUGGAGGcGCAGCUG-CGCg- -3'
miRNA:   3'- gaCGCGGACCUCU-UGUUGGCuGUGga -5'
13968 3' -55.5 NC_003521.1 + 125240 0.77 0.486557
Target:  5'- gCUGCGCCgcgUGGAGGGCAACCaGAU-CCUg -3'
miRNA:   3'- -GACGCGG---ACCUCUUGUUGG-CUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 27282 0.72 0.731583
Target:  5'- -cGCGCCUGGAGccuCGguuucgauGCCGugGCCc -3'
miRNA:   3'- gaCGCGGACCUCuu-GU--------UGGCugUGGa -5'
13968 3' -55.5 NC_003521.1 + 153009 0.77 0.486557
Target:  5'- -cGCGCUgcccgUGGAGGACAACCGGCuggugGCCa -3'
miRNA:   3'- gaCGCGG-----ACCUCUUGUUGGCUG-----UGGa -5'
13968 3' -55.5 NC_003521.1 + 219449 0.74 0.652912
Target:  5'- aUGgGCCUGGGGcuCAGCCGcCACUg -3'
miRNA:   3'- gACgCGGACCUCuuGUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 227883 0.72 0.741136
Target:  5'- -gGcCGCCguguUGGAGGGcCGACCGGCGCCc -3'
miRNA:   3'- gaC-GCGG----ACCUCUU-GUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 164409 0.71 0.787369
Target:  5'- aCUGCGaggacgCUGGGGGACAGCgGAUuCCUg -3'
miRNA:   3'- -GACGCg-----GACCUCUUGUUGgCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 152289 0.76 0.514828
Target:  5'- gCUGCgGCCUGGuGAAgc-CCGACACCUg -3'
miRNA:   3'- -GACG-CGGACCuCUUguuGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 120412 0.75 0.592997
Target:  5'- cCUGCGCaccuccgUGGAGGugAGCCG-CACCUc -3'
miRNA:   3'- -GACGCGg------ACCUCUugUUGGCuGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.