miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 31920 1.08 0.005712
Target:  5'- gCUGCGCCUGGAGAACAACCGACACCUg -3'
miRNA:   3'- -GACGCGGACCUCUUGUUGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 63327 0.8 0.335476
Target:  5'- -cGUGCCUGGAGAGCGACUGcgauccCACCUc -3'
miRNA:   3'- gaCGCGGACCUCUUGUUGGCu-----GUGGA- -5'
13968 3' -55.5 NC_003521.1 + 226362 0.8 0.350477
Target:  5'- -aGCGCCgcgGGAGcGGCGGCUGACGCCg -3'
miRNA:   3'- gaCGCGGa--CCUC-UUGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 144192 0.79 0.379465
Target:  5'- -cGCGCgCUGGAGAacgGCAagcugcagcagugcGCCGACGCCUg -3'
miRNA:   3'- gaCGCG-GACCUCU---UGU--------------UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 21094 0.77 0.468123
Target:  5'- gCUGCGCCaaUGGAGAGauaGACCGuuGCCUc -3'
miRNA:   3'- -GACGCGG--ACCUCUUg--UUGGCugUGGA- -5'
13968 3' -55.5 NC_003521.1 + 164820 0.77 0.477296
Target:  5'- -aGCGCCcgcgGGGGAggaggaaccgGCGGCCGGCGCCa -3'
miRNA:   3'- gaCGCGGa---CCUCU----------UGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 125240 0.77 0.486557
Target:  5'- gCUGCGCCgcgUGGAGGGCAACCaGAU-CCUg -3'
miRNA:   3'- -GACGCGG---ACCUCUUGUUGG-CUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 153009 0.77 0.486557
Target:  5'- -cGCGCUgcccgUGGAGGACAACCGGCuggugGCCa -3'
miRNA:   3'- gaCGCGG-----ACCUCUUGUUGGCUG-----UGGa -5'
13968 3' -55.5 NC_003521.1 + 129216 0.76 0.495901
Target:  5'- -gGCGCgUGGuGGGCAGuCCGGCGCCg -3'
miRNA:   3'- gaCGCGgACCuCUUGUU-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 152289 0.76 0.514828
Target:  5'- gCUGCgGCCUGGuGAAgc-CCGACACCUg -3'
miRNA:   3'- -GACG-CGGACCuCUUguuGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 71364 0.76 0.524401
Target:  5'- -cGCGCCUGGcGAcgaacccgccGCcGCCGACGCCg -3'
miRNA:   3'- gaCGCGGACCuCU----------UGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 46789 0.76 0.534042
Target:  5'- gUGCGCCUGGAGAAgAcgcccguguGCCaGCACCc -3'
miRNA:   3'- gACGCGGACCUCUUgU---------UGGcUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 73171 0.76 0.543744
Target:  5'- cCUGCGaCCUGGAcgcgGAGCuGGCCGGCAUCg -3'
miRNA:   3'- -GACGC-GGACCU----CUUG-UUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 59669 0.75 0.563314
Target:  5'- -cGCGCCUGGAGGA--GCUcaGACGCCa -3'
miRNA:   3'- gaCGCGGACCUCUUguUGG--CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 102259 0.75 0.583067
Target:  5'- cCUGUGCCUGGAcacGCAGCUG-CACCg -3'
miRNA:   3'- -GACGCGGACCUcu-UGUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 120412 0.75 0.592997
Target:  5'- cCUGCGCaccuccgUGGAGGugAGCCG-CACCUc -3'
miRNA:   3'- -GACGCGg------ACCUCUugUUGGCuGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 141804 0.75 0.592997
Target:  5'- aUGCGCCUGGAccucGAGCGGCaacaGCACCa -3'
miRNA:   3'- gACGCGGACCU----CUUGUUGgc--UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 88464 0.74 0.609938
Target:  5'- -aGCaGCCUGGAGAAgGACCaccugaugcucagcGACGCCg -3'
miRNA:   3'- gaCG-CGGACCUCUUgUUGG--------------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 124190 0.74 0.622925
Target:  5'- -gGCGCCgcugcaacuggUGGAGAACAgcGCCGcGCGCCg -3'
miRNA:   3'- gaCGCGG-----------ACCUCUUGU--UGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 24947 0.74 0.632923
Target:  5'- uUGCGCgUGGAGAACGaagaaccuGCCGuCACUa -3'
miRNA:   3'- gACGCGgACCUCUUGU--------UGGCuGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.