Results 1 - 20 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13968 | 3' | -55.5 | NC_003521.1 | + | 136054 | 0.66 | 0.969779 |
Target: 5'- gUGCGaCCUGGGcAGCGGCUGcGCGCUc -3' miRNA: 3'- gACGC-GGACCUcUUGUUGGC-UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 132887 | 0.66 | 0.969779 |
Target: 5'- -gGCGCCgccgccgagucUGGAagccguugcGGAC-GCCGACGCCg -3' miRNA: 3'- gaCGCGG-----------ACCU---------CUUGuUGGCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 91922 | 0.66 | 0.969779 |
Target: 5'- aUGCGCCaGG-GAGCcGCgGGCACg- -3' miRNA: 3'- gACGCGGaCCuCUUGuUGgCUGUGga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 40194 | 0.66 | 0.969779 |
Target: 5'- -aGCuGCUggcGGAGGACAuccacaucuacAUCGACGCCUu -3' miRNA: 3'- gaCG-CGGa--CCUCUUGU-----------UGGCUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 232171 | 0.66 | 0.969779 |
Target: 5'- -gGCGCg-GGAGAAgAGCCGcUGCCg -3' miRNA: 3'- gaCGCGgaCCUCUUgUUGGCuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 70721 | 0.66 | 0.969779 |
Target: 5'- cCUGCGCC-GGAugu--ACCGGCACUUc -3' miRNA: 3'- -GACGCGGaCCUcuuguUGGCUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 155860 | 0.66 | 0.969779 |
Target: 5'- -cGCGCUucgUGGAGAuccuGCAGaagGACACCUu -3' miRNA: 3'- gaCGCGG---ACCUCU----UGUUgg-CUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 55295 | 0.66 | 0.969779 |
Target: 5'- -cGCGUCUcucGGAGCcGCCGACGCUg -3' miRNA: 3'- gaCGCGGAcc-UCUUGuUGGCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 57576 | 0.66 | 0.969779 |
Target: 5'- -cGCGCCUucGAGGGCG-CCGGCGgCg -3' miRNA: 3'- gaCGCGGAc-CUCUUGUuGGCUGUgGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 34454 | 0.66 | 0.969779 |
Target: 5'- gCUGCggGCCUGGGGGuCGucGCCGcAgGCCa -3' miRNA: 3'- -GACG--CGGACCUCUuGU--UGGC-UgUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 217886 | 0.66 | 0.969779 |
Target: 5'- --aCGCCgaGGAGAugGCGGCCGAgaCGCCc -3' miRNA: 3'- gacGCGGa-CCUCU--UGUUGGCU--GUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 100022 | 0.66 | 0.968019 |
Target: 5'- -aGCGCCUGGucaAGAagccgggccaaaugaGCGGCugggugcgcgaCGACGCCUg -3' miRNA: 3'- gaCGCGGACC---UCU---------------UGUUG-----------GCUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 109974 | 0.66 | 0.966806 |
Target: 5'- cCUGCGCCUGcaguAGGGCGGCCu--GCCg -3' miRNA: 3'- -GACGCGGACc---UCUUGUUGGcugUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 34696 | 0.66 | 0.966806 |
Target: 5'- -aGCGCCuacgUGGAGucGCAcCgCGACGCCc -3' miRNA: 3'- gaCGCGG----ACCUCu-UGUuG-GCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 77481 | 0.66 | 0.966806 |
Target: 5'- -aGCGUcacgCUGGAGAACGGCau-CACCc -3' miRNA: 3'- gaCGCG----GACCUCUUGUUGgcuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 17102 | 0.66 | 0.966806 |
Target: 5'- cCUGCGCCgGcGAGGACggUCGGuccuCAUCg -3' miRNA: 3'- -GACGCGGaC-CUCUUGuuGGCU----GUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 41873 | 0.66 | 0.966806 |
Target: 5'- -cGCGCCUGGuGccCAACCucCACUg -3' miRNA: 3'- gaCGCGGACCuCuuGUUGGcuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 150479 | 0.66 | 0.963632 |
Target: 5'- -aGCGCCUGGuGGGgcccuuCAGCuuuuaCGGCGCCg -3' miRNA: 3'- gaCGCGGACCuCUU------GUUG-----GCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 213711 | 0.66 | 0.963632 |
Target: 5'- gUGgGCCUcGGGGAugccCAGCCagacGGCGCCg -3' miRNA: 3'- gACgCGGA-CCUCUu---GUUGG----CUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 204385 | 0.66 | 0.963632 |
Target: 5'- -gGCGCCUGGcccGAGCAgguggaggcgcAgUGGCGCCa -3' miRNA: 3'- gaCGCGGACCu--CUUGU-----------UgGCUGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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