miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 31920 1.08 0.005712
Target:  5'- gCUGCGCCUGGAGAACAACCGACACCUg -3'
miRNA:   3'- -GACGCGGACCUCUUGUUGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 79132 0.7 0.83837
Target:  5'- -cGCGCCUGGucauCGACCGGCggaucACCa -3'
miRNA:   3'- gaCGCGGACCucuuGUUGGCUG-----UGGa -5'
13968 3' -55.5 NC_003521.1 + 146402 0.7 0.83837
Target:  5'- -cGCGCUcgcGGAaAAUGGCCGACACCa -3'
miRNA:   3'- gaCGCGGa--CCUcUUGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 17775 0.71 0.787369
Target:  5'- -cGCGCCgccgGGccgGGAACcGCCGugACCg -3'
miRNA:   3'- gaCGCGGa---CC---UCUUGuUGGCugUGGa -5'
13968 3' -55.5 NC_003521.1 + 218609 0.72 0.721948
Target:  5'- -gGCcuGCCUGGugauGAAC-ACCGGCACCa -3'
miRNA:   3'- gaCG--CGGACCu---CUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 59164 0.69 0.876034
Target:  5'- cCUGCGCaUGGAGAcgggcuGCGACuCGccGCGCCa -3'
miRNA:   3'- -GACGCGgACCUCU------UGUUG-GC--UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 117550 0.7 0.854017
Target:  5'- -aGCGUgaGGGGA---GCCGGCACCa -3'
miRNA:   3'- gaCGCGgaCCUCUuguUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 124190 0.74 0.622925
Target:  5'- -gGCGCCgcugcaacuggUGGAGAACAgcGCCGcGCGCCg -3'
miRNA:   3'- gaCGCGG-----------ACCUCUUGU--UGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 127525 0.7 0.813576
Target:  5'- -cGCGCCUGGGcgccauGGACG-CCGACgaGCCg -3'
miRNA:   3'- gaCGCGGACCU------CUUGUuGGCUG--UGGa -5'
13968 3' -55.5 NC_003521.1 + 172597 0.71 0.804987
Target:  5'- gUGUGCCac-AGGACGGCCGAgGCCUg -3'
miRNA:   3'- gACGCGGaccUCUUGUUGGCUgUGGA- -5'
13968 3' -55.5 NC_003521.1 + 120412 0.75 0.592997
Target:  5'- cCUGCGCaccuccgUGGAGGugAGCCG-CACCUc -3'
miRNA:   3'- -GACGCGg------ACCUCUugUUGGCuGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 102259 0.75 0.583067
Target:  5'- cCUGUGCCUGGAcacGCAGCUG-CACCg -3'
miRNA:   3'- -GACGCGGACCUcu-UGUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 96254 0.69 0.889682
Target:  5'- -aGCGCCgcgGGAGAcgACAGCgGAgAUCg -3'
miRNA:   3'- gaCGCGGa--CCUCU--UGUUGgCUgUGGa -5'
13968 3' -55.5 NC_003521.1 + 211197 0.69 0.882964
Target:  5'- uUGCaCCUGGGcGAcgACGACCGACgACCc -3'
miRNA:   3'- gACGcGGACCU-CU--UGUUGGCUG-UGGa -5'
13968 3' -55.5 NC_003521.1 + 240308 0.7 0.83837
Target:  5'- -gGCGCCaucggcGGAGGACcgcCCGGCGCCc -3'
miRNA:   3'- gaCGCGGa-----CCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 227883 0.72 0.741136
Target:  5'- -gGcCGCCguguUGGAGGGcCGACCGGCGCCc -3'
miRNA:   3'- gaC-GCGG----ACCUCUU-GUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 57876 0.72 0.721948
Target:  5'- -cGUGCCUGGAGcGCGACgGcACGCUg -3'
miRNA:   3'- gaCGCGGACCUCuUGUUGgC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 46789 0.76 0.534042
Target:  5'- gUGCGCCUGGAGAAgAcgcccguguGCCaGCACCc -3'
miRNA:   3'- gACGCGGACCUCUUgU---------UGGcUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 54585 0.71 0.796248
Target:  5'- gUGCGCCUGGugacGGAGCA--CGACGCgCUg -3'
miRNA:   3'- gACGCGGACC----UCUUGUugGCUGUG-GA- -5'
13968 3' -55.5 NC_003521.1 + 153641 0.7 0.822008
Target:  5'- cCUGCGCUacGAcGGGCuguGCCGGCACCa -3'
miRNA:   3'- -GACGCGGacCU-CUUGu--UGGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.