miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 100022 0.66 0.968019
Target:  5'- -aGCGCCUGGucaAGAagccgggccaaaugaGCGGCugggugcgcgaCGACGCCUg -3'
miRNA:   3'- gaCGCGGACC---UCU---------------UGUUG-----------GCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 55295 0.66 0.969779
Target:  5'- -cGCGUCUcucGGAGCcGCCGACGCUg -3'
miRNA:   3'- gaCGCGGAcc-UCUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 203671 0.66 0.963632
Target:  5'- gUGCgacgGCCUGGGaGGCGugGCCGGgACCUg -3'
miRNA:   3'- gACG----CGGACCUcUUGU--UGGCUgUGGA- -5'
13968 3' -55.5 NC_003521.1 + 77481 0.66 0.966806
Target:  5'- -aGCGUcacgCUGGAGAACGGCau-CACCc -3'
miRNA:   3'- gaCGCG----GACCUCUUGUUGgcuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 222603 0.66 0.960252
Target:  5'- gUGuCGCCUGGAGGAgcugccCGugUGcCACCa -3'
miRNA:   3'- gAC-GCGGACCUCUU------GUugGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 224674 0.66 0.956662
Target:  5'- -aGCGCCUGGccGGCGagguguACCGGCugGCCg -3'
miRNA:   3'- gaCGCGGACCucUUGU------UGGCUG--UGGa -5'
13968 3' -55.5 NC_003521.1 + 232171 0.66 0.969779
Target:  5'- -gGCGCg-GGAGAAgAGCCGcUGCCg -3'
miRNA:   3'- gaCGCGgaCCUCUUgUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 17102 0.66 0.966806
Target:  5'- cCUGCGCCgGcGAGGACggUCGGuccuCAUCg -3'
miRNA:   3'- -GACGCGGaC-CUCUUGuuGGCU----GUGGa -5'
13968 3' -55.5 NC_003521.1 + 217886 0.66 0.969779
Target:  5'- --aCGCCgaGGAGAugGCGGCCGAgaCGCCc -3'
miRNA:   3'- gacGCGGa-CCUCU--UGUUGGCU--GUGGa -5'
13968 3' -55.5 NC_003521.1 + 34696 0.66 0.966806
Target:  5'- -aGCGCCuacgUGGAGucGCAcCgCGACGCCc -3'
miRNA:   3'- gaCGCGG----ACCUCu-UGUuG-GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 128128 0.66 0.956291
Target:  5'- -cGCGCaucCUGGuGGGCAACCugcccgacgggcuGGCGCCg -3'
miRNA:   3'- gaCGCG---GACCuCUUGUUGG-------------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 132887 0.66 0.969779
Target:  5'- -gGCGCCgccgccgagucUGGAagccguugcGGAC-GCCGACGCCg -3'
miRNA:   3'- gaCGCGG-----------ACCU---------CUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 91922 0.66 0.969779
Target:  5'- aUGCGCCaGG-GAGCcGCgGGCACg- -3'
miRNA:   3'- gACGCGGaCCuCUUGuUGgCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 40194 0.66 0.969779
Target:  5'- -aGCuGCUggcGGAGGACAuccacaucuacAUCGACGCCUu -3'
miRNA:   3'- gaCG-CGGa--CCUCUUGU-----------UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 204385 0.66 0.963632
Target:  5'- -gGCGCCUGGcccGAGCAgguggaggcgcAgUGGCGCCa -3'
miRNA:   3'- gaCGCGGACCu--CUUGU-----------UgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 142118 0.66 0.960252
Target:  5'- gUGCGaCCUGGAGcuggaggcgGACGACgCGgaaaACGCCa -3'
miRNA:   3'- gACGC-GGACCUC---------UUGUUG-GC----UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 219253 0.66 0.960252
Target:  5'- -aGCGCCgGGuAGAGCAgggcccgcagggGCUGGCACa- -3'
miRNA:   3'- gaCGCGGaCC-UCUUGU------------UGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 63151 0.66 0.960252
Target:  5'- gCUGCGCg-GGcuGACGAUCGACGCg- -3'
miRNA:   3'- -GACGCGgaCCucUUGUUGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 116900 0.66 0.960252
Target:  5'- -cGCGCCggcgGGAGAccccuuucGCu-CCGACAgCUa -3'
miRNA:   3'- gaCGCGGa---CCUCU--------UGuuGGCUGUgGA- -5'
13968 3' -55.5 NC_003521.1 + 103877 0.66 0.963632
Target:  5'- -aGCGCCgacagGGGGAugGGCUGcCGCg- -3'
miRNA:   3'- gaCGCGGa----CCUCUugUUGGCuGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.