Results 21 - 40 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13968 | 3' | -55.5 | NC_003521.1 | + | 136969 | 0.66 | 0.963632 |
Target: 5'- gCUGCGCgaGGAGAucgaggcCAACCGgauagaucgGCAUCa -3' miRNA: 3'- -GACGCGgaCCUCUu------GUUGGC---------UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 103877 | 0.66 | 0.963632 |
Target: 5'- -aGCGCCgacagGGGGAugGGCUGcCGCg- -3' miRNA: 3'- gaCGCGGa----CCUCUugUUGGCuGUGga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 34696 | 0.66 | 0.966806 |
Target: 5'- -aGCGCCuacgUGGAGucGCAcCgCGACGCCc -3' miRNA: 3'- gaCGCGG----ACCUCu-UGUuG-GCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 217886 | 0.66 | 0.969779 |
Target: 5'- --aCGCCgaGGAGAugGCGGCCGAgaCGCCc -3' miRNA: 3'- gacGCGGa-CCUCU--UGUUGGCU--GUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 17102 | 0.66 | 0.966806 |
Target: 5'- cCUGCGCCgGcGAGGACggUCGGuccuCAUCg -3' miRNA: 3'- -GACGCGGaC-CUCUUGuuGGCU----GUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 232171 | 0.66 | 0.969779 |
Target: 5'- -gGCGCg-GGAGAAgAGCCGcUGCCg -3' miRNA: 3'- gaCGCGgaCCUCUUgUUGGCuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 168241 | 0.66 | 0.956291 |
Target: 5'- gUGCGCCUGGuGGucgaaaaGCAGCCaGACGu-- -3' miRNA: 3'- gACGCGGACCuCU-------UGUUGG-CUGUgga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 219007 | 0.66 | 0.956662 |
Target: 5'- -cGCaGCaUGGGGGACcgucCCGACGCCg -3' miRNA: 3'- gaCG-CGgACCUCUUGuu--GGCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 125838 | 0.66 | 0.963632 |
Target: 5'- uCUGCGUCgagGGcacGGAACAACUGAUcgaaaacccguGCCg -3' miRNA: 3'- -GACGCGGa--CC---UCUUGUUGGCUG-----------UGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 100022 | 0.66 | 0.968019 |
Target: 5'- -aGCGCCUGGucaAGAagccgggccaaaugaGCGGCugggugcgcgaCGACGCCUg -3' miRNA: 3'- gaCGCGGACC---UCU---------------UGUUG-----------GCUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 168362 | 0.66 | 0.956291 |
Target: 5'- -gGCGCgugUUGGAGGGCAuCCGACcggugguGCCg -3' miRNA: 3'- gaCGCG---GACCUCUUGUuGGCUG-------UGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 132887 | 0.66 | 0.969779 |
Target: 5'- -gGCGCCgccgccgagucUGGAagccguugcGGAC-GCCGACGCCg -3' miRNA: 3'- gaCGCGG-----------ACCU---------CUUGuUGGCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 116900 | 0.66 | 0.960252 |
Target: 5'- -cGCGCCggcgGGAGAccccuuucGCu-CCGACAgCUa -3' miRNA: 3'- gaCGCGGa---CCUCU--------UGuuGGCUGUgGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 63151 | 0.66 | 0.960252 |
Target: 5'- gCUGCGCg-GGcuGACGAUCGACGCg- -3' miRNA: 3'- -GACGCGgaCCucUUGUUGGCUGUGga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 219253 | 0.66 | 0.960252 |
Target: 5'- -aGCGCCgGGuAGAGCAgggcccgcagggGCUGGCACa- -3' miRNA: 3'- gaCGCGGaCC-UCUUGU------------UGGCUGUGga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 142118 | 0.66 | 0.960252 |
Target: 5'- gUGCGaCCUGGAGcuggaggcgGACGACgCGgaaaACGCCa -3' miRNA: 3'- gACGC-GGACCUC---------UUGUUG-GC----UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 193036 | 0.66 | 0.960252 |
Target: 5'- -cGUGCCggUGGAGAucgagcugauggACGGCCcgcgGACGCCg -3' miRNA: 3'- gaCGCGG--ACCUCU------------UGUUGG----CUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 40194 | 0.66 | 0.969779 |
Target: 5'- -aGCuGCUggcGGAGGACAuccacaucuacAUCGACGCCUu -3' miRNA: 3'- gaCG-CGGa--CCUCUUGU-----------UGGCUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 91922 | 0.66 | 0.969779 |
Target: 5'- aUGCGCCaGG-GAGCcGCgGGCACg- -3' miRNA: 3'- gACGCGGaCCuCUUGuUGgCUGUGga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 203671 | 0.66 | 0.963632 |
Target: 5'- gUGCgacgGCCUGGGaGGCGugGCCGGgACCUg -3' miRNA: 3'- gACG----CGGACCUcUUGU--UGGCUgUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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