miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 240388 0.68 0.914358
Target:  5'- -cGCGCCcgccGGGACGACCGcACGCCc -3'
miRNA:   3'- gaCGCGGacc-UCUUGUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 240308 0.7 0.83837
Target:  5'- -gGCGCCaucggcGGAGGACcgcCCGGCGCCc -3'
miRNA:   3'- gaCGCGGa-----CCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 233721 0.71 0.796248
Target:  5'- -aGCgGCCUGGAGAAgGaggacGCCGcCGCCg -3'
miRNA:   3'- gaCG-CGGACCUCUUgU-----UGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 233511 0.66 0.963632
Target:  5'- cCUGUGCCUucugcuccuGAGGACccuGCUGAUGCCUg -3'
miRNA:   3'- -GACGCGGAc--------CUCUUGu--UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 232404 0.69 0.889682
Target:  5'- gCUGCGCCUGcGGcacGGCAacGCCaGCGCCUg -3'
miRNA:   3'- -GACGCGGACcUC---UUGU--UGGcUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 232171 0.66 0.969779
Target:  5'- -gGCGCg-GGAGAAgAGCCGcUGCCg -3'
miRNA:   3'- gaCGCGgaCCUCUUgUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 231832 0.66 0.963632
Target:  5'- aUGaCGCUgaGGGGGAUGACaaaGGCACCUa -3'
miRNA:   3'- gAC-GCGGa-CCUCUUGUUGg--CUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 228372 0.66 0.956291
Target:  5'- gCUGCuacgcgcgcaacaGCCUGGAcGAGguuuCCGGCGCCUc -3'
miRNA:   3'- -GACG-------------CGGACCU-CUUguu-GGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 227883 0.72 0.741136
Target:  5'- -gGcCGCCguguUGGAGGGcCGACCGGCGCCc -3'
miRNA:   3'- gaC-GCGG----ACCUCUU-GUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 226972 0.67 0.952856
Target:  5'- cCUGUGUCUGGGuccgccGAAgGGCUGGCACg- -3'
miRNA:   3'- -GACGCGGACCU------CUUgUUGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 226935 0.67 0.952856
Target:  5'- uUGCGCCUaGAGGACGagaucAUCGucaGCGCCa -3'
miRNA:   3'- gACGCGGAcCUCUUGU-----UGGC---UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 226362 0.8 0.350477
Target:  5'- -aGCGCCgcgGGAGcGGCGGCUGACGCCg -3'
miRNA:   3'- gaCGCGGa--CCUC-UUGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 225955 0.68 0.902465
Target:  5'- -gGCGCCUGG-GAGCGccuggACCccaACGCCUu -3'
miRNA:   3'- gaCGCGGACCuCUUGU-----UGGc--UGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 224674 0.66 0.956662
Target:  5'- -aGCGCCUGGccGGCGagguguACCGGCugGCCg -3'
miRNA:   3'- gaCGCGGACCucUUGU------UGGCUG--UGGa -5'
13968 3' -55.5 NC_003521.1 + 222603 0.66 0.960252
Target:  5'- gUGuCGCCUGGAGGAgcugccCGugUGcCACCa -3'
miRNA:   3'- gAC-GCGGACCUCUU------GUugGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 222516 0.67 0.948832
Target:  5'- -cGCGCagCUGGAGAGCGcGCuCGACugguuCCUg -3'
miRNA:   3'- gaCGCG--GACCUCUUGU-UG-GCUGu----GGA- -5'
13968 3' -55.5 NC_003521.1 + 222367 0.71 0.787369
Target:  5'- -aGCGCCUcGAGAcGCuGCCGGCGCUg -3'
miRNA:   3'- gaCGCGGAcCUCU-UGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 219449 0.74 0.652912
Target:  5'- aUGgGCCUGGGGcuCAGCCGcCACUg -3'
miRNA:   3'- gACgCGGACCUCuuGUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 219253 0.66 0.960252
Target:  5'- -aGCGCCgGGuAGAGCAgggcccgcagggGCUGGCACa- -3'
miRNA:   3'- gaCGCGGaCC-UCUUGU------------UGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 219007 0.66 0.956662
Target:  5'- -cGCaGCaUGGGGGACcgucCCGACGCCg -3'
miRNA:   3'- gaCG-CGgACCUCUUGuu--GGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.