miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 56932 0.67 0.952856
Target:  5'- aCUGCGaCCUGGugcgcGAGCGggaggugcACCGGC-CCg -3'
miRNA:   3'- -GACGC-GGACCu----CUUGU--------UGGCUGuGGa -5'
13968 3' -55.5 NC_003521.1 + 57576 0.66 0.969779
Target:  5'- -cGCGCCUucGAGGGCG-CCGGCGgCg -3'
miRNA:   3'- gaCGCGGAc-CUCUUGUuGGCUGUgGa -5'
13968 3' -55.5 NC_003521.1 + 57876 0.72 0.721948
Target:  5'- -cGUGCCUGGAGcGCGACgGcACGCUg -3'
miRNA:   3'- gaCGCGGACCUCuUGUUGgC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 59164 0.69 0.876034
Target:  5'- cCUGCGCaUGGAGAcgggcuGCGACuCGccGCGCCa -3'
miRNA:   3'- -GACGCGgACCUCU------UGUUG-GC--UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 59669 0.75 0.563314
Target:  5'- -cGCGCCUGGAGGA--GCUcaGACGCCa -3'
miRNA:   3'- gaCGCGGACCUCUUguUGG--CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 63151 0.66 0.960252
Target:  5'- gCUGCGCg-GGcuGACGAUCGACGCg- -3'
miRNA:   3'- -GACGCGgaCCucUUGUUGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 63327 0.8 0.335476
Target:  5'- -cGUGCCUGGAGAGCGACUGcgauccCACCUc -3'
miRNA:   3'- gaCGCGGACCUCUUGUUGGCu-----GUGGA- -5'
13968 3' -55.5 NC_003521.1 + 63629 0.72 0.721948
Target:  5'- -cGcCGCCUGGAGAAguACCGcACGCg- -3'
miRNA:   3'- gaC-GCGGACCUCUUguUGGC-UGUGga -5'
13968 3' -55.5 NC_003521.1 + 63887 0.68 0.908524
Target:  5'- -cGCGCCgGGAGcuGCAGCaguugGGCACCc -3'
miRNA:   3'- gaCGCGGaCCUCu-UGUUGg----CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 65095 0.72 0.712238
Target:  5'- -gGCGCCaGGAGGAaGAgCGGCGCCg -3'
miRNA:   3'- gaCGCGGaCCUCUUgUUgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 67278 0.71 0.769217
Target:  5'- -cGgGCagGGAGGACAGCCGcuGCGCCUg -3'
miRNA:   3'- gaCgCGgaCCUCUUGUUGGC--UGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 68035 0.68 0.908524
Target:  5'- gCUGgGUCUGGGuGuuggcuucguucAGCAGCCGGCACUg -3'
miRNA:   3'- -GACgCGGACCU-C------------UUGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 70721 0.66 0.969779
Target:  5'- cCUGCGCC-GGAugu--ACCGGCACUUc -3'
miRNA:   3'- -GACGCGGaCCUcuuguUGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 70857 0.7 0.821172
Target:  5'- -cGCGCCUcccaggaGGAGAGCAACgaCGACAUa- -3'
miRNA:   3'- gaCGCGGA-------CCUCUUGUUG--GCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 71364 0.76 0.524401
Target:  5'- -cGCGCCUGGcGAcgaacccgccGCcGCCGACGCCg -3'
miRNA:   3'- gaCGCGGACCuCU----------UGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 73171 0.76 0.543744
Target:  5'- cCUGCGaCCUGGAcgcgGAGCuGGCCGGCAUCg -3'
miRNA:   3'- -GACGC-GGACCU----CUUG-UUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 73503 0.67 0.948832
Target:  5'- -aGCGCgugucgaUGGAGAGCGGCgcgcagaGGCGCCg -3'
miRNA:   3'- gaCGCGg------ACCUCUUGUUGg------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 74191 0.68 0.902465
Target:  5'- -gGCGCCcGGcGcGCGGcCCGACGCCg -3'
miRNA:   3'- gaCGCGGaCCuCuUGUU-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 77481 0.66 0.966806
Target:  5'- -aGCGUcacgCUGGAGAACGGCau-CACCc -3'
miRNA:   3'- gaCGCG----GACCUCUUGUUGgcuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 78830 0.68 0.925345
Target:  5'- -gGCGUCaacgGGGGuGCGacACCGGCGCCg -3'
miRNA:   3'- gaCGCGGa---CCUCuUGU--UGGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.