miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 79132 0.7 0.83837
Target:  5'- -cGCGCCUGGucauCGACCGGCggaucACCa -3'
miRNA:   3'- gaCGCGGACCucuuGUUGGCUG-----UGGa -5'
13968 3' -55.5 NC_003521.1 + 84957 0.67 0.94716
Target:  5'- -gGCcgGCCUGGAGGugugcacGCAGCugcuggcgcugcugCGACGCCUg -3'
miRNA:   3'- gaCG--CGGACCUCU-------UGUUG--------------GCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 85104 0.68 0.925345
Target:  5'- gCUGCGUUUGGAucacuGCGACCGcCAUCa -3'
miRNA:   3'- -GACGCGGACCUcu---UGUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 88464 0.74 0.609938
Target:  5'- -aGCaGCCUGGAGAAgGACCaccugaugcucagcGACGCCg -3'
miRNA:   3'- gaCG-CGGACCUCUUgUUGG--------------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 91108 0.68 0.908524
Target:  5'- cCUGCGCCggucGGGGAuuccCCGGCAUCc -3'
miRNA:   3'- -GACGCGGa---CCUCUuguuGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 91922 0.66 0.969779
Target:  5'- aUGCGCCaGG-GAGCcGCgGGCACg- -3'
miRNA:   3'- gACGCGGaCCuCUUGuUGgCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 96254 0.69 0.889682
Target:  5'- -aGCGCCgcgGGAGAcgACAGCgGAgAUCg -3'
miRNA:   3'- gaCGCGGa--CCUCU--UGUUGgCUgUGGa -5'
13968 3' -55.5 NC_003521.1 + 100022 0.66 0.968019
Target:  5'- -aGCGCCUGGucaAGAagccgggccaaaugaGCGGCugggugcgcgaCGACGCCUg -3'
miRNA:   3'- gaCGCGGACC---UCU---------------UGUUG-----------GCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 101829 0.68 0.919966
Target:  5'- -cGCGCggagcgGGGGGACGA-CGACGCCg -3'
miRNA:   3'- gaCGCGga----CCUCUUGUUgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 102259 0.75 0.583067
Target:  5'- cCUGUGCCUGGAcacGCAGCUG-CACCg -3'
miRNA:   3'- -GACGCGGACCUcu-UGUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 102333 0.67 0.940116
Target:  5'- gUGCGCgUGGGc----GCCGACGCCg -3'
miRNA:   3'- gACGCGgACCUcuuguUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 103572 0.68 0.919966
Target:  5'- -aGCGCCUGcuGGAguACCGGCGCg- -3'
miRNA:   3'- gaCGCGGACcuCUUguUGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 103877 0.66 0.963632
Target:  5'- -aGCGCCgacagGGGGAugGGCUGcCGCg- -3'
miRNA:   3'- gaCGCGGa----CCUCUugUUGGCuGUGga -5'
13968 3' -55.5 NC_003521.1 + 105850 0.67 0.940116
Target:  5'- gCUGCGCCggcGGcGGcgacgacacgGCGGCgGACGCCg -3'
miRNA:   3'- -GACGCGGa--CCuCU----------UGUUGgCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 109472 0.73 0.702464
Target:  5'- -cGCGUCUGG-GAACAugCG-CGCCa -3'
miRNA:   3'- gaCGCGGACCuCUUGUugGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 109974 0.66 0.966806
Target:  5'- cCUGCGCCUGcaguAGGGCGGCCu--GCCg -3'
miRNA:   3'- -GACGCGGACc---UCUUGUUGGcugUGGa -5'
13968 3' -55.5 NC_003521.1 + 110146 0.67 0.948832
Target:  5'- -cGCGCCgUGGAGAugGcacgcaagGCCuuCACCg -3'
miRNA:   3'- gaCGCGG-ACCUCUugU--------UGGcuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 113692 0.68 0.919966
Target:  5'- uCUGCGCCgccUGGAGGu--GCaCGACGCgCUg -3'
miRNA:   3'- -GACGCGG---ACCUCUuguUG-GCUGUG-GA- -5'
13968 3' -55.5 NC_003521.1 + 116086 0.69 0.861555
Target:  5'- -aGCGCCUGcuGAGCcACCcGCGCCUg -3'
miRNA:   3'- gaCGCGGACcuCUUGuUGGcUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 116144 0.66 0.963632
Target:  5'- -gGCGCaggugaaGGAGAACuuGCCGgugcGCACCUg -3'
miRNA:   3'- gaCGCGga-----CCUCUUGu-UGGC----UGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.