miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 129216 0.76 0.495901
Target:  5'- -gGCGCgUGGuGGGCAGuCCGGCGCCg -3'
miRNA:   3'- gaCGCGgACCuCUUGUU-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 164820 0.77 0.477296
Target:  5'- -aGCGCCcgcgGGGGAggaggaaccgGCGGCCGGCGCCa -3'
miRNA:   3'- gaCGCGGa---CCUCU----------UGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 21094 0.77 0.468123
Target:  5'- gCUGCGCCaaUGGAGAGauaGACCGuuGCCUc -3'
miRNA:   3'- -GACGCGG--ACCUCUUg--UUGGCugUGGA- -5'
13968 3' -55.5 NC_003521.1 + 144192 0.79 0.379465
Target:  5'- -cGCGCgCUGGAGAacgGCAagcugcagcagugcGCCGACGCCUg -3'
miRNA:   3'- gaCGCG-GACCUCU---UGU--------------UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 226362 0.8 0.350477
Target:  5'- -aGCGCCgcgGGAGcGGCGGCUGACGCCg -3'
miRNA:   3'- gaCGCGGa--CCUC-UUGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 109472 0.73 0.702464
Target:  5'- -cGCGUCUGG-GAACAugCG-CGCCa -3'
miRNA:   3'- gaCGCGGACCuCUUGUugGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 65095 0.72 0.712238
Target:  5'- -gGCGCCaGGAGGAaGAgCGGCGCCg -3'
miRNA:   3'- gaCGCGGaCCUCUUgUUgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 22988 0.69 0.861555
Target:  5'- uCUGCGCCUGGuuGACGgugauAgCGGCAUCc -3'
miRNA:   3'- -GACGCGGACCucUUGU-----UgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 16573 0.69 0.861555
Target:  5'- gCUGCGCCUGcGAG-GCGACCGGgGa-- -3'
miRNA:   3'- -GACGCGGAC-CUCuUGUUGGCUgUgga -5'
13968 3' -55.5 NC_003521.1 + 163727 0.7 0.846286
Target:  5'- cCUGCGUCgGGAuGAGCGgcGCCGGCGgCa -3'
miRNA:   3'- -GACGCGGaCCU-CUUGU--UGGCUGUgGa -5'
13968 3' -55.5 NC_003521.1 + 156619 0.7 0.846286
Target:  5'- -cGCGCCUGGu--GCuGCgCGACGCCc -3'
miRNA:   3'- gaCGCGGACCucuUGuUG-GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 201007 0.7 0.83837
Target:  5'- -gGCGCCaucggcGGAGGACcgcCCGGCGCCc -3'
miRNA:   3'- gaCGCGGa-----CCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 193244 0.7 0.83837
Target:  5'- -aGCGCCUGGGGuaccccggauACggUCGGCugCg -3'
miRNA:   3'- gaCGCGGACCUCu---------UGuuGGCUGugGa -5'
13968 3' -55.5 NC_003521.1 + 70857 0.7 0.821172
Target:  5'- -cGCGCCUcccaggaGGAGAGCAACgaCGACAUa- -3'
miRNA:   3'- gaCGCGGA-------CCUCUUGUUG--GCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 233721 0.71 0.796248
Target:  5'- -aGCgGCCUGGAGAAgGaggacGCCGcCGCCg -3'
miRNA:   3'- gaCG-CGGACCUCUUgU-----UGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 218439 0.71 0.778355
Target:  5'- -aGCGgCggcaccacGGAGGACAugGCCGGCACCa -3'
miRNA:   3'- gaCGCgGa-------CCUCUUGU--UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 67278 0.71 0.769217
Target:  5'- -cGgGCagGGAGGACAGCCGcuGCGCCUg -3'
miRNA:   3'- gaCgCGgaCCUCUUGUUGGC--UGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 116540 0.72 0.731583
Target:  5'- -cGCGCuuuCUGGAGAucguCAGCCG-CGCCUc -3'
miRNA:   3'- gaCGCG---GACCUCUu---GUUGGCuGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 63629 0.72 0.721948
Target:  5'- -cGcCGCCUGGAGAAguACCGcACGCg- -3'
miRNA:   3'- gaC-GCGGACCUCUUguUGGC-UGUGga -5'
13968 3' -55.5 NC_003521.1 + 192239 0.72 0.712238
Target:  5'- -gGCGCCgcgGGAGggUGGCCGuuagccguCACCUu -3'
miRNA:   3'- gaCGCGGa--CCUCuuGUUGGCu-------GUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.