miRNA display CGI


Results 41 - 60 of 275 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 44767 0.8 0.232282
Target:  5'- uCCACCUcGCCGGCCuUCCGCCcggugcucuacaACCUGc -3'
miRNA:   3'- -GGUGGA-UGGCCGGuAGGCGG------------UGGACu -5'
13968 5' -59.1 NC_003521.1 + 45623 0.69 0.731091
Target:  5'- gCGCCgacgcagaCGGCCA-CCGCCGCCg-- -3'
miRNA:   3'- gGUGGaug-----GCCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 46529 0.67 0.864653
Target:  5'- gCACCU-CUGcGCUA-CCGCCACCgagGGc -3'
miRNA:   3'- gGUGGAuGGC-CGGUaGGCGGUGGa--CU- -5'
13968 5' -59.1 NC_003521.1 + 46900 0.73 0.521307
Target:  5'- cCCGCC-GCCGacGCCGUCUaCCGCCUGGc -3'
miRNA:   3'- -GGUGGaUGGC--CGGUAGGcGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 49569 0.73 0.493809
Target:  5'- aCCACCUGCCgcgugGGCCGcggCGCCGCCUc- -3'
miRNA:   3'- -GGUGGAUGG-----CCGGUag-GCGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 51375 0.66 0.884478
Target:  5'- aCCAgcCCUcCCGGCUGUCCGagaagguugccuaCCACCUcaGAa -3'
miRNA:   3'- -GGU--GGAuGGCCGGUAGGC-------------GGUGGA--CU- -5'
13968 5' -59.1 NC_003521.1 + 52507 0.71 0.625089
Target:  5'- aCCGCCUGCCGcugcccaacuguaGCCcgCCGCCcuACCg-- -3'
miRNA:   3'- -GGUGGAUGGC-------------CGGuaGGCGG--UGGacu -5'
13968 5' -59.1 NC_003521.1 + 52619 0.68 0.822043
Target:  5'- gCGCCUccgagcuacgagcagGCCgugGGCCuggGUCCGCCGCCg-- -3'
miRNA:   3'- gGUGGA---------------UGG---CCGG---UAGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 53072 0.67 0.867484
Target:  5'- uUCACCgUGaaGGCgGUccagguggagccgcaCCGCCGCCUGGa -3'
miRNA:   3'- -GGUGG-AUggCCGgUA---------------GGCGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 53473 0.66 0.891565
Target:  5'- aCgGCCUGCCGggcgaGCCGggCCGCgCGCCg-- -3'
miRNA:   3'- -GgUGGAUGGC-----CGGUa-GGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 54043 0.68 0.776383
Target:  5'- cCCGCC-GCC-GCCAccaCCGCCGCCUc- -3'
miRNA:   3'- -GGUGGaUGGcCGGUa--GGCGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 54148 0.7 0.710499
Target:  5'- aCCGCCggcguuggagagGCCGccGCC-UCCGCCACCg-- -3'
miRNA:   3'- -GGUGGa-----------UGGC--CGGuAGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 54755 0.67 0.864653
Target:  5'- aCGCCgggccGCCGGCCAUCaaguUCAuCCUGGg -3'
miRNA:   3'- gGUGGa----UGGCCGGUAGgc--GGU-GGACU- -5'
13968 5' -59.1 NC_003521.1 + 56021 0.7 0.712384
Target:  5'- aCCGCCgGCCGcGCCugucgCUGCCGCCc-- -3'
miRNA:   3'- -GGUGGaUGGC-CGGua---GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 56518 0.67 0.857447
Target:  5'- uCUGCCUGCCGGCCugccUCaGCC-CCg-- -3'
miRNA:   3'- -GGUGGAUGGCCGGu---AGgCGGuGGacu -5'
13968 5' -59.1 NC_003521.1 + 56965 0.68 0.793747
Target:  5'- aCGCg-ACCaGcGUCAUCCGCUGCCUGGg -3'
miRNA:   3'- gGUGgaUGG-C-CGGUAGGCGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 57356 0.68 0.818801
Target:  5'- -gGCCUcuacCCGGCCAUCCugUGCCUGGa -3'
miRNA:   3'- ggUGGAu---GGCCGGUAGGcgGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 58746 0.67 0.842493
Target:  5'- aCCACCUGuCUgGGCCAUUgGCagacCCUGGu -3'
miRNA:   3'- -GGUGGAU-GG-CCGGUAGgCGgu--GGACU- -5'
13968 5' -59.1 NC_003521.1 + 59113 0.7 0.693434
Target:  5'- uUACCUGCUGGgCAUCCG-CGCCa-- -3'
miRNA:   3'- gGUGGAUGGCCgGUAGGCgGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 59890 0.67 0.850058
Target:  5'- aCGCCUgcgaGCCGcggucgccGCCGgggCCGCCGCCa-- -3'
miRNA:   3'- gGUGGA----UGGC--------CGGUa--GGCGGUGGacu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.