miRNA display CGI


Results 21 - 40 of 275 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 28594 0.67 0.850058
Target:  5'- uCgGCC-ACCGGCgGUCCGCagGCCg-- -3'
miRNA:   3'- -GgUGGaUGGCCGgUAGGCGg-UGGacu -5'
13968 5' -59.1 NC_003521.1 + 31363 0.67 0.842493
Target:  5'- gCGCCgcgugUACCGGCCG-CCGCCGUCg-- -3'
miRNA:   3'- gGUGG-----AUGGCCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 31705 0.72 0.54938
Target:  5'- aCGCCgUGCUGGCgcugcgcauCAUCCGCCugCUGc -3'
miRNA:   3'- gGUGG-AUGGCCG---------GUAGGCGGugGACu -5'
13968 5' -59.1 NC_003521.1 + 31733 0.73 0.502904
Target:  5'- aCGCCg--CGGCCAccgccUCCGCCGCCUcGAc -3'
miRNA:   3'- gGUGGaugGCCGGU-----AGGCGGUGGA-CU- -5'
13968 5' -59.1 NC_003521.1 + 31885 1.09 0.00252
Target:  5'- uCCACCUACCGGCCAUCCGCCACCUGAc -3'
miRNA:   3'- -GGUGGAUGGCCGGUAGGCGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 32070 0.68 0.776383
Target:  5'- aCCACgUACUGGCCcgUgGCCACg--- -3'
miRNA:   3'- -GGUGgAUGGCCGGuaGgCGGUGgacu -5'
13968 5' -59.1 NC_003521.1 + 32167 0.68 0.793747
Target:  5'- gCUGCCUGCCGcaguuCCugugCCGCgGCCUGGc -3'
miRNA:   3'- -GGUGGAUGGCc----GGua--GGCGgUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 32471 0.7 0.683887
Target:  5'- gCCGCgUugCGaGCCAUCC-CCACCa-- -3'
miRNA:   3'- -GGUGgAugGC-CGGUAGGcGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 32890 0.66 0.878501
Target:  5'- gCCGCCggUGCUGccGCCGUgcCCGCCGCCc-- -3'
miRNA:   3'- -GGUGG--AUGGC--CGGUA--GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 33909 0.69 0.758558
Target:  5'- cCCGCuCUGCUGGCCGccccUCCaCgGCCUGu -3'
miRNA:   3'- -GGUG-GAUGGCCGGU----AGGcGgUGGACu -5'
13968 5' -59.1 NC_003521.1 + 34638 0.69 0.731091
Target:  5'- aCCACCUGCUGGUgCGcaaCGCCcaggACCUGGg -3'
miRNA:   3'- -GGUGGAUGGCCG-GUag-GCGG----UGGACU- -5'
13968 5' -59.1 NC_003521.1 + 35024 0.65 0.903224
Target:  5'- gCACCUcAUCGGCguggucuCGUaCGCCGCCUGu -3'
miRNA:   3'- gGUGGA-UGGCCG-------GUAgGCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 38925 0.71 0.615425
Target:  5'- gCCGCCUGCuguuCGGUCAUCgGCgguguggUACCUGAg -3'
miRNA:   3'- -GGUGGAUG----GCCGGUAGgCG-------GUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 39437 0.67 0.850058
Target:  5'- gCCG-CUGCCGGCCGagcCCGgCGCCgagGGc -3'
miRNA:   3'- -GGUgGAUGGCCGGUa--GGCgGUGGa--CU- -5'
13968 5' -59.1 NC_003521.1 + 41037 0.66 0.885132
Target:  5'- -gACgCUGCaGGCCAUCCGuaCCACCg-- -3'
miRNA:   3'- ggUG-GAUGgCCGGUAGGC--GGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 42559 0.67 0.842493
Target:  5'- aCGCCcgGCUGGCUGUCCGgCgGCCg-- -3'
miRNA:   3'- gGUGGa-UGGCCGGUAGGC-GgUGGacu -5'
13968 5' -59.1 NC_003521.1 + 42615 0.68 0.802239
Target:  5'- gCCGCCgGCgGcGCCGU-CGCCGCCaUGGa -3'
miRNA:   3'- -GGUGGaUGgC-CGGUAgGCGGUGG-ACU- -5'
13968 5' -59.1 NC_003521.1 + 43171 0.67 0.82606
Target:  5'- gCugCUGCCGcacgagcGCCA-CCGCgACCUGu -3'
miRNA:   3'- gGugGAUGGC-------CGGUaGGCGgUGGACu -5'
13968 5' -59.1 NC_003521.1 + 43746 0.74 0.484791
Target:  5'- gCCGCCg--CGGCCAgcacggCCGCCGCgCUGGc -3'
miRNA:   3'- -GGUGGaugGCCGGUa-----GGCGGUG-GACU- -5'
13968 5' -59.1 NC_003521.1 + 43834 0.67 0.857447
Target:  5'- gCCGCC-GCCGGCCGcgggcCCGUCACa--- -3'
miRNA:   3'- -GGUGGaUGGCCGGUa----GGCGGUGgacu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.