miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 196 0.73 0.512071
Target:  5'- uCCgACCgGCCGGCCcgCCGCaCGCCg-- -3'
miRNA:   3'- -GG-UGGaUGGCCGGuaGGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 710 0.68 0.810592
Target:  5'- gCUGCCUcACCGGCUGgcuuaCCGCCgGCUUGGc -3'
miRNA:   3'- -GGUGGA-UGGCCGGUa----GGCGG-UGGACU- -5'
13968 5' -59.1 NC_003521.1 + 2736 0.66 0.885132
Target:  5'- aCCGCCUcGCUGGCUggCUGCUGCUa-- -3'
miRNA:   3'- -GGUGGA-UGGCCGGuaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 4347 0.7 0.702936
Target:  5'- gCCACCgccGCCGGCgGUUCGCuCAUCg-- -3'
miRNA:   3'- -GGUGGa--UGGCCGgUAGGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 5539 0.67 0.864653
Target:  5'- aCGgCaGCCGGCgCggCCGCCGCCa-- -3'
miRNA:   3'- gGUgGaUGGCCG-GuaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 5798 0.66 0.891565
Target:  5'- gCgGCCgcGCCGGCUG-CCGUCACCg-- -3'
miRNA:   3'- -GgUGGa-UGGCCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 10769 0.67 0.842493
Target:  5'- gCCGCCUgggggGCCacGCCAUCC-CCGCCg-- -3'
miRNA:   3'- -GGUGGA-----UGGc-CGGUAGGcGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 11741 0.75 0.424055
Target:  5'- aCCACgguUUGGCCAUCCacGCCGCCUGGg -3'
miRNA:   3'- -GGUGgauGGCCGGUAGG--CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 12559 0.7 0.702936
Target:  5'- cUCACCgUGCUGGCCAaaCCGaCCACCa-- -3'
miRNA:   3'- -GGUGG-AUGGCCGGUa-GGC-GGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 13192 0.67 0.850058
Target:  5'- gCuCCUcCCGGCCcugGUcCCGCCACCa-- -3'
miRNA:   3'- gGuGGAuGGCCGG---UA-GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 17757 0.74 0.466995
Target:  5'- aCCGCCgugACCGGCgGcgCCGCUACCg-- -3'
miRNA:   3'- -GGUGGa--UGGCCGgUa-GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 18038 0.67 0.826859
Target:  5'- uUCACCUGa---CCGUCCGCCGCCg-- -3'
miRNA:   3'- -GGUGGAUggccGGUAGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 18999 0.67 0.826859
Target:  5'- gCCACC-GCC-GCCAcgaucgCCGCCGCCa-- -3'
miRNA:   3'- -GGUGGaUGGcCGGUa-----GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 23913 0.66 0.891565
Target:  5'- aCCGCCUccgcugccACCGcGCCcUCC-UCACCUGc -3'
miRNA:   3'- -GGUGGA--------UGGC-CGGuAGGcGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 25832 0.69 0.746753
Target:  5'- cCCACCUGuCCccgcGGCCgccugcacaacagcGUCCGCCGucgcucucCCUGAa -3'
miRNA:   3'- -GGUGGAU-GG----CCGG--------------UAGGCGGU--------GGACU- -5'
13968 5' -59.1 NC_003521.1 + 26192 0.72 0.597102
Target:  5'- gCCGCCUGCaaGCaCAUCUuggauuuuGCCACCUGGc -3'
miRNA:   3'- -GGUGGAUGgcCG-GUAGG--------CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 27467 0.71 0.626055
Target:  5'- gCGCCagGCUGGCCAggUCCGUCAUgUGGc -3'
miRNA:   3'- gGUGGa-UGGCCGGU--AGGCGGUGgACU- -5'
13968 5' -59.1 NC_003521.1 + 28247 0.72 0.597102
Target:  5'- cUCACgCUGCCgccguGGCCGUgagCGCCGCCUGGc -3'
miRNA:   3'- -GGUG-GAUGG-----CCGGUAg--GCGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 28353 0.67 0.86251
Target:  5'- gCGCCUGCuCGGCUuccCCGCCGucguccuccccccuCCUGu -3'
miRNA:   3'- gGUGGAUG-GCCGGua-GGCGGU--------------GGACu -5'
13968 5' -59.1 NC_003521.1 + 28525 0.71 0.644422
Target:  5'- aCGCCUgcgugcccauGCCGGCC-UUCGCCcuggccaGCCUGGu -3'
miRNA:   3'- gGUGGA----------UGGCCGGuAGGCGG-------UGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.