miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 142505 0.72 0.587488
Target:  5'- aCCACCgucgUGGCCG-CCGCCACCa-- -3'
miRNA:   3'- -GGUGGaug-GCCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 196 0.73 0.512071
Target:  5'- uCCgACCgGCCGGCCcgCCGCaCGCCg-- -3'
miRNA:   3'- -GG-UGGaUGGCCGGuaGGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 240745 0.73 0.512071
Target:  5'- uCCgACCgGCCGGCCcgCCGCaCGCCg-- -3'
miRNA:   3'- -GG-UGGaUGGCCGGuaGGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 165907 0.73 0.530606
Target:  5'- cCCGCgCUGCCgGGCCGacuccaccgCCGCCACCg-- -3'
miRNA:   3'- -GGUG-GAUGG-CCGGUa--------GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 196017 0.73 0.539965
Target:  5'- gUCGCCcuCCGGCCAUCCGCUcagcguuugucgGCCUa- -3'
miRNA:   3'- -GGUGGauGGCCGGUAGGCGG------------UGGAcu -5'
13968 5' -59.1 NC_003521.1 + 193190 0.73 0.539965
Target:  5'- gCCGCCagaGCC-GCCGUCacgGCCGCCUGGa -3'
miRNA:   3'- -GGUGGa--UGGcCGGUAGg--CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 163798 0.72 0.556947
Target:  5'- aCCACC-GCCGGCCucaaccgcaugCUGCC-CCUGGa -3'
miRNA:   3'- -GGUGGaUGGCCGGua---------GGCGGuGGACU- -5'
13968 5' -59.1 NC_003521.1 + 143254 0.72 0.568354
Target:  5'- aUCACC-ACCu-CCAUCCGCgGCCUGAc -3'
miRNA:   3'- -GGUGGaUGGccGGUAGGCGgUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 111505 0.72 0.577904
Target:  5'- aCCGCCUGCUGGgCGaccucuucCCGCCGCCg-- -3'
miRNA:   3'- -GGUGGAUGGCCgGUa-------GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 31733 0.73 0.502904
Target:  5'- aCGCCg--CGGCCAccgccUCCGCCGCCUcGAc -3'
miRNA:   3'- gGUGGaugGCCGGU-----AGGCGGUGGA-CU- -5'
13968 5' -59.1 NC_003521.1 + 179235 0.73 0.493809
Target:  5'- cCCGCC-GCgGGCCuUCUGgCGCCUGAa -3'
miRNA:   3'- -GGUGGaUGgCCGGuAGGCgGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 49569 0.73 0.493809
Target:  5'- aCCACCUGCCgcgugGGCCGcggCGCCGCCUc- -3'
miRNA:   3'- -GGUGGAUGG-----CCGGUag-GCGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 44767 0.8 0.232282
Target:  5'- uCCACCUcGCCGGCCuUCCGCCcggugcucuacaACCUGc -3'
miRNA:   3'- -GGUGGA-UGGCCGGuAGGCGG------------UGGACu -5'
13968 5' -59.1 NC_003521.1 + 68507 0.76 0.383564
Target:  5'- uCCGCCgcgACCGGCCuggCGCCACCg-- -3'
miRNA:   3'- -GGUGGa--UGGCCGGuagGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 138483 0.76 0.383564
Target:  5'- gCCACCUGCCGcCCGUCUaCCAgCUGAu -3'
miRNA:   3'- -GGUGGAUGGCcGGUAGGcGGUgGACU- -5'
13968 5' -59.1 NC_003521.1 + 11741 0.75 0.424055
Target:  5'- aCCACgguUUGGCCAUCCacGCCGCCUGGg -3'
miRNA:   3'- -GGUGgauGGCCGGUAGG--CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 164605 0.75 0.424055
Target:  5'- aCGCC-ACCGGCCG-CCGCCACUc-- -3'
miRNA:   3'- gGUGGaUGGCCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 142358 0.74 0.458224
Target:  5'- gCCGCCg--CGGCCG-CCGCCGCCUc- -3'
miRNA:   3'- -GGUGGaugGCCGGUaGGCGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 224414 0.74 0.466995
Target:  5'- aCACCUcGCCGGCCAggCGCUGCgUGGu -3'
miRNA:   3'- gGUGGA-UGGCCGGUagGCGGUGgACU- -5'
13968 5' -59.1 NC_003521.1 + 171112 0.74 0.475851
Target:  5'- aCCGCgUACCucagGGCCG-CCGCCACCg-- -3'
miRNA:   3'- -GGUGgAUGG----CCGGUaGGCGGUGGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.