miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 35024 0.65 0.903224
Target:  5'- gCACCUcAUCGGCguggucuCGUaCGCCGCCUGu -3'
miRNA:   3'- gGUGGA-UGGCCG-------GUAgGCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 100459 0.66 0.873741
Target:  5'- gCCGCCgaagaagaguggugaCGGCCGUugcuaCCGCCGCCa-- -3'
miRNA:   3'- -GGUGGaug------------GCCGGUA-----GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 71520 0.66 0.87715
Target:  5'- gCgACCgacGCCGGCCGacgucaccgagcCCGCCGCCg-- -3'
miRNA:   3'- -GgUGGa--UGGCCGGUa-----------GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 79589 0.66 0.891565
Target:  5'- gCCGCuaCUGCCGcuGCCG-CCGCCAUCg-- -3'
miRNA:   3'- -GGUG--GAUGGC--CGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 117178 0.66 0.878501
Target:  5'- -aGCCUAaCCcGCCGUcgcugCCGCCGCCcGAg -3'
miRNA:   3'- ggUGGAU-GGcCGGUA-----GGCGGUGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 209200 0.66 0.878501
Target:  5'- cCCACCgucgGCCgcgguGGCC--CUGCCAgCUGAc -3'
miRNA:   3'- -GGUGGa---UGG-----CCGGuaGGCGGUgGACU- -5'
13968 5' -59.1 NC_003521.1 + 239785 0.66 0.871673
Target:  5'- gCC-CCgacGCCGGCCAUCUGgCugCg-- -3'
miRNA:   3'- -GGuGGa--UGGCCGGUAGGCgGugGacu -5'
13968 5' -59.1 NC_003521.1 + 41037 0.66 0.885132
Target:  5'- -gACgCUGCaGGCCAUCCGuaCCACCg-- -3'
miRNA:   3'- ggUG-GAUGgCCGGUAGGC--GGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 23913 0.66 0.891565
Target:  5'- aCCGCCUccgcugccACCGcGCCcUCC-UCACCUGc -3'
miRNA:   3'- -GGUGGA--------UGGC-CGGuAGGcGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 68730 0.66 0.885132
Target:  5'- gCCGCCcGCaCGGacuuCAUCaCGCCGCCgcUGAc -3'
miRNA:   3'- -GGUGGaUG-GCCg---GUAG-GCGGUGG--ACU- -5'
13968 5' -59.1 NC_003521.1 + 145996 0.66 0.877827
Target:  5'- cCCG-CUGCCGGCUuuugucaAUCCgcGCCACCa-- -3'
miRNA:   3'- -GGUgGAUGGCCGG-------UAGG--CGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 238980 0.66 0.871673
Target:  5'- gCC-CCgucCCGGUCugucGUCCGCCAUgCUGAg -3'
miRNA:   3'- -GGuGGau-GGCCGG----UAGGCGGUG-GACU- -5'
13968 5' -59.1 NC_003521.1 + 151080 0.66 0.891565
Target:  5'- gCCGC--GCCGGCUG-CCGUCACCg-- -3'
miRNA:   3'- -GGUGgaUGGCCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 132260 0.66 0.869587
Target:  5'- aCCACCUggGCCGcaacGCCAaccucuugaccgugUgCCGCCACgUGGa -3'
miRNA:   3'- -GGUGGA--UGGC----CGGU--------------A-GGCGGUGgACU- -5'
13968 5' -59.1 NC_003521.1 + 32890 0.66 0.878501
Target:  5'- gCCGCCggUGCUGccGCCGUgcCCGCCGCCc-- -3'
miRNA:   3'- -GGUGG--AUGGC--CGGUA--GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 129829 0.66 0.891565
Target:  5'- gCCGCCUGCUgcuggGGCCcgUgGCCGugcCCUGc -3'
miRNA:   3'- -GGUGGAUGG-----CCGGuaGgCGGU---GGACu -5'
13968 5' -59.1 NC_003521.1 + 116782 0.66 0.871673
Target:  5'- gCCGCCgcggcacGCUGGCCGUCUacgGCCGCgaccccgaCUGGg -3'
miRNA:   3'- -GGUGGa------UGGCCGGUAGG---CGGUG--------GACU- -5'
13968 5' -59.1 NC_003521.1 + 224600 0.66 0.890295
Target:  5'- uUCGCac-UCGGCCAggcggcagggcgCCGCCACCUcGAa -3'
miRNA:   3'- -GGUGgauGGCCGGUa-----------GGCGGUGGA-CU- -5'
13968 5' -59.1 NC_003521.1 + 76622 0.66 0.871673
Target:  5'- aCCACC-GCCGccccGCCGuUCCGCCuCCUc- -3'
miRNA:   3'- -GGUGGaUGGC----CGGU-AGGCGGuGGAcu -5'
13968 5' -59.1 NC_003521.1 + 65763 0.66 0.891565
Target:  5'- aCGCUgACgGGCCGcaucacaCCGCCGCCgGAc -3'
miRNA:   3'- gGUGGaUGgCCGGUa------GGCGGUGGaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.